Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F04_e414_12.seq
         (1648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...   141   2e-34
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   5.7  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    27   5.7  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    27   9.9  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score =  141 bits (342), Expect = 2e-34
 Identities = 70/163 (42%), Positives = 106/163 (65%), Gaps = 4/163 (2%)
 Frame = +3

Query: 180 KDPFDSMPKGSFNMDDFKRFYSNEE-EAKSIPYFWEKFDPEHYSIWYCQYKYPEELAK-V 353
           K P  S P GSF+++++KR YSN++  + ++P+F+E FDPE+YS+W   Y YPE+L + V
Sbjct: 252 KHPLASAPNGSFDIEEYKRVYSNQDTRSGALPWFFEHFDPENYSVWKVDYSYPEDLKQPV 311

Query: 354 FMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHEL--AFPLSPDWQID 527
           FM+ NLI G FQRL+  RK  F    + G + D+TI+G +V +GH+   AF ++PDW   
Sbjct: 312 FMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAFDVAPDW--- 368

Query: 528 YESYEWTKLDPHSPDTKALLRDYFSWTGTDKDGRKFNQGKIFK 656
             SY +TKLD + P+ KA + D ++W     +GR+   GK+ K
Sbjct: 369 -GSYTFTKLDINKPEDKAFIEDAWAW-DKPIEGREVADGKVCK 409


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 468 VWVWRGHELAFPLSPDWQIDYESYEWTKL 554
           ++V  GH    PLS  W  D E+  WT++
Sbjct: 260 IFVHGGHNDTGPLSDLWLFDLETLSWTEV 288


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 420 ASVCLFGGDNDSTISGVWVWRGHELAFPLSPD--WQIDYESYEWTKL 554
           A VC F GD+D  +   W+  G    F  + +  +QI  E Y W+ +
Sbjct: 675 ADVCGFLGDSDEELCSRWMAMGAFSPFYRNHNNIYQISQEPYTWSSV 721


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = -3

Query: 338 LRVLVLAVPDGVVLGIKLLPEVRNRFRLLFVRIETLEVI---HIERPLWHRVKRVFGLPW 168
           L V+++A PDGVVL      EV   + L +    T  V+   +  RP+   VK +   PW
Sbjct: 201 LGVILIAYPDGVVLYSIRTDEVIRFYELEYAPGSTAAVLSPHNYRRPI---VKGIEWSPW 257

Query: 167 VSH 159
             H
Sbjct: 258 GDH 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,173,661
Number of Sequences: 5004
Number of extensions: 69346
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 935586128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)