Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F04_e414_12.seq
         (1648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671...   107   2e-23
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899...    94   3e-19

>02_02_0095 +
           6716327-6716335,6717302-6717451,6717523-6717583,
           6717646-6717725,6717802-6717903,6717982-6718471,
           6718796-6719171,6720320-6720379,6720887-6721056,
           6721287-6721340,6721384-6721523,6722362-6722511,
           6722582-6722642,6722705-6722784,6722933-6723034,
           6723111-6723612,6724401-6724776,6725419-6725493,
           6726058-6726198,6726264-6726282
          Length = 1065

 Score =  107 bits (258), Expect = 2e-23
 Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
 Frame = +3

Query: 180 KDPFDSMPKGSFNMDDFKRFYSNEE---EAKSIPYFWEKFDPEHYSIWYCQYKYPEELAK 350
           K+P D +P     +D++KR YSN +      +I  FW+ +DPE YS+W+C YKY +E   
Sbjct: 264 KNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTV 323

Query: 351 VFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHELAFPLSPDWQIDY 530
            F++ N + G  QR+D  RK AF  + + G +    + G+W++RG E+      D   D 
Sbjct: 324 SFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIP-KFVMDEVYDM 382

Query: 531 ESYEWTKLD 557
           E YEWTK+D
Sbjct: 383 ELYEWTKVD 391



 Score =  107 bits (258), Expect = 2e-23
 Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
 Frame = +3

Query: 180  KDPFDSMPKGSFNMDDFKRFYSNEE---EAKSIPYFWEKFDPEHYSIWYCQYKYPEELAK 350
            K+P D +P     +D++KR YSN +      +I  FW+ +DPE YS+W+C YKY +E   
Sbjct: 829  KNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTV 888

Query: 351  VFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHELAFPLSPDWQIDY 530
             F++ N + G  QR+D  RK AF  + + G +    + G+W++RG E+      D   D 
Sbjct: 889  SFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIP-KFVMDEVYDM 947

Query: 531  ESYEWTKLD 557
            E YEWTK+D
Sbjct: 948  ELYEWTKVD 956


>06_03_0529 -
           21788132-21788395,21788414-21788511,21789458-21789953,
           21790033-21790134,21790218-21790270,21790354-21790414,
           21790491-21790640,21791298-21791350,21794125-21794152
          Length = 434

 Score = 93.9 bits (223), Expect = 3e-19
 Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
 Frame = +3

Query: 180 KDPFDSMPKGSFNMDDFKRFYSNEE---EAKSIPYFWEKFDPEHYSIWYCQYKYPEELAK 350
           K+P D +P     +D++KR YSN +      +I  FW+ +DPE YS+W+C YKY +E   
Sbjct: 281 KNPLDLLPPSKMILDEWKRLYSNTKTNFREIAIKGFWDMYDPEGYSLWFCDYKYNDENTV 340

Query: 351 VFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHELAFPLSPDWQIDY 530
            F++ N      +R+D  RK AF  + + G      + G+W++RG ++      D   D 
Sbjct: 341 SFVTMN------KRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIP-KFVMDEVYDM 393

Query: 531 ESYEWTKLD 557
           E YEWTK+D
Sbjct: 394 ELYEWTKVD 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,208,551
Number of Sequences: 37544
Number of extensions: 518346
Number of successful extensions: 1239
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 14,793,348
effective HSP length: 86
effective length of database: 11,564,564
effective search space used: 5342828568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)