Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F04_e414_12.seq
         (1648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   3.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   4.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   5.7  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 187 GSLDXLGFLIKLFLYSGFCRLFLLXWV 107
           G    +G++I  FL +G  + FL+ W+
Sbjct: 151 GRTHTVGYIIIGFLLAGIVQPFLIHWI 177


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 773 TTEQSVVINAILLNINKTRFALIS 702
           TTEQSVV+  +   IN    ++IS
Sbjct: 825 TTEQSVVVTNVTTTINTPTTSVIS 848


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 939 DWXXPWRYPTLIRLCSKFP 995
           DW   W++P L+ +  +FP
Sbjct: 861 DWRH-WKFPNLVEVLDEFP 878


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 300,024
Number of Sequences: 438
Number of extensions: 5134
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 58257375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)