Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_F03_e406_11.seq
(1575 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 62 2e-10
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 56 2e-08
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 42 3e-04
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 39 0.002
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 37 0.009
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 36 0.020
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 34 0.047
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 32 0.19
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 28 4.1
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 27 7.1
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 27 9.4
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 27 9.4
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 62.1 bits (144), Expect = 2e-10
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
Frame = +2
Query: 332 RVVVLGSPRSGKSAVVVRYLTKRYIGEYSSTGDFLYQHRVAFDGAVSEVEILDTSNCAIR 511
++VV+G GKSA+ ++ + ++ EY T + Y+ + DG + +++LDT+
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQEEY 69
Query: 512 GCLAE-HVRWGDAFAVVYSVCXXXXXXXXXXXXXXXXXTRLPGCAAVTLLGNKRDLEHAR 688
+ E ++R G+ F +VY++ + V L+ NK DLE R
Sbjct: 70 SAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAER 129
Query: 689 EVHAEEGQXLSLRFGCQFYE 748
V EG+ L+ C + E
Sbjct: 130 VVSRAEGEQLAKSMHCLYVE 149
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 55.6 bits (128), Expect = 2e-08
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 1/140 (0%)
Frame = +2
Query: 332 RVVVLGSPRSGKSAVVVRYLTKRYIGEYSSTGDFLYQHRVAFDGAVSEVEILDTSNCAIR 511
R+ VLGS GKS++ V+Y+ ++ Y T + + + + G EI+DT+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEY 67
Query: 512 GCL-AEHVRWGDAFAVVYSVCXXXXXXXXXXXXXXXXXTRLPGCAAVTLLGNKRDLEHAR 688
L ++H + +VYS+ + ++GNK DL R
Sbjct: 68 SILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQR 127
Query: 689 EVHAEEGQXLSLRFGCQFYE 748
V AEEG+ L+ + C + E
Sbjct: 128 AVTAEEGKALANEWKCAWTE 147
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 41.5 bits (93), Expect = 3e-04
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Frame = +2
Query: 317 TVNRIRVVVLGSPRSGKSAVVVRYLTKRYIGEYSST-G-DFLYQHRVAFDGAVSEVEILD 490
++ + ++V LG GK++++ R++ ++ Y +T G DFL + D V +++ D
Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWD 66
Query: 491 TSNCA-IRGCLAEHVRWGDAFAVVYSVCXXXXXXXXXXXXXXXXXTRLPGCAAVTLLGNK 667
T+ R + ++R +VY + R + L+GNK
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDD-VIIVLVGNK 125
Query: 668 RDLEHAREVHAEEGQ 712
DL R+V EEG+
Sbjct: 126 TDLADKRQVTQEEGE 140
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 39.1 bits (87), Expect = 0.002
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 2/142 (1%)
Frame = +2
Query: 329 IRVVVLGSPRSGKSAVVVRYLTKRYIGEYSSTGDFLYQHR-VAFDGAVSEVEILDTSNCA 505
I+++++G GKS +++R+ + + +T ++ R + DG +++I DT+
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 506 -IRGCLAEHVRWGDAFAVVYSVCXXXXXXXXXXXXXXXXXTRLPGCAAVTLLGNKRDLEH 682
R + R ++Y V + L+GNK D E
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKI-LIGNKCDCED 128
Query: 683 AREVHAEEGQXLSLRFGCQFYE 748
R+V E+GQ L+ G +F E
Sbjct: 129 QRQVSFEQGQALADELGVKFLE 150
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 36.7 bits (81), Expect = 0.009
Identities = 32/141 (22%), Positives = 51/141 (36%), Gaps = 2/141 (1%)
Frame = +2
Query: 332 RVVVLGSPRSGKSAVVVRYLTKRYIGEYSST-GDFLYQHRVAFDGAVSEVEILDTSNCA- 505
+ V++G GKS +++R+ + E ST G + D + +I DT+
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 506 IRGCLAEHVRWGDAFAVVYSVCXXXXXXXXXXXXXXXXXTRLPGCAAVTLLGNKRDLEHA 685
R + + R +VY + + L+GNK DL H
Sbjct: 72 YRAITSAYYRGAVGALIVYDI-TKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHL 130
Query: 686 REVHAEEGQXLSLRFGCQFYE 748
R V EE Q + F E
Sbjct: 131 RAVSTEEAQAFAAENNLSFIE 151
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 35.5 bits (78), Expect = 0.020
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 5/131 (3%)
Frame = +2
Query: 329 IRVVVLGSPRSGKSAVVVRYLTKRYIGEYSSTGDFLYQHRVAFDGAVSE-----VEILDT 493
+++V+ G +GKS ++ R++ ++ + S T + R+ G ++ ++I DT
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69
Query: 494 SNCAIRGCLAEHVRWGDAFAVVYSVCXXXXXXXXXXXXXXXXXTRLPGCAAVTLLGNKRD 673
+ +A + G A AV+ P V L G+K D
Sbjct: 70 AGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSD 129
Query: 674 LEHAREVHAEE 706
L++ R+V EE
Sbjct: 130 LQNQRQVSTEE 140
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 34.3 bits (75), Expect = 0.047
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Frame = +2
Query: 329 IRVVVLGSPRSGKSAVVVRYLTKRYIGEYSST--GDFLYQHRVAFDGAVSEVEILDTSNC 502
++V++LG GK++++ +Y+ +++ +Y +T DFL + V D V +++ DT+
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTK-EVLVDDKVVTLQLWDTAGQ 67
Query: 503 -AIRGCLAEHVRWGDAFAVVYSVCXXXXXXXXXX---XXXXXXXTRLPGCAAVTLLGNKR 670
+ R D +VY V P LLGNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKV 127
Query: 671 DLEHAREV 694
D+E + +
Sbjct: 128 DVEEQKRM 135
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 32.3 bits (70), Expect = 0.19
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Frame = +2
Query: 329 IRVVVLGSPRSGKSAVVVRYLTKRYIGEYSST--GDFLYQHRVAFDGAVSEVEILDTSNC 502
++VV+LG GK+ ++ +++ +++ EY +T DFL + V D V+ +++ DT+
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVT-LQLWDTAGQ 67
Query: 503 -AIRGCLAEHVRWGDAFAVVYSV 568
+ R D +VY+V
Sbjct: 68 ERFQSLGMAFYRGADCCVIVYNV 90
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 332 RVVVLGSPRSGKSAVVVRYLTKRYIGE-YSSTGDFLYQHRVAFDGAVSEVEILDTS 496
++V+LG +GK++ ++ TK Y + Y T Y H + DG E+ + DT+
Sbjct: 15 KIVILGDGAAGKTS-LLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTA 69
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 795 HYLREARAXGTYYCPRXDESLLPTLSLRGLERFSGK 902
HYLR+A G + + P +GLE+F K
Sbjct: 104 HYLRKAERNGYDFLSEGQNDITPEEERKGLEKFGMK 139
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 804 REARAXGTYYCPRXDESLLPTLSLRGLERFSGKTAK 911
R+ARA G YY P + L+ + +RG+ K K
Sbjct: 75 RKARAEGNYYVP-DETKLVFVIRIRGINNIPPKARK 109
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 26.6 bits (56), Expect = 9.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 775 RSTCVSCTICERRVH 819
R + + CTICERR H
Sbjct: 1364 RDSFIDCTICERRFH 1378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,060,548
Number of Sequences: 5004
Number of extensions: 69275
Number of successful extensions: 184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 888013952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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