Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F03_e406_11.seq
         (1575 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    38   8e-04
AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein p...    27   1.9  
DQ974166-1|ABJ52806.1|  494|Anopheles gambiae serpin 6 protein.        26   3.4  

>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 37.9 bits (84), Expect = 8e-04
 Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 1/122 (0%)
 Frame = +2

Query: 329 IRVVVLGSPRSGKSAVVVRYLTKRYIGEYSSTGDFLYQHRVAFDGAVSEVEILDTSNCAI 508
           I+ VV+G    GK+ +++ Y T  + GEY  T    Y   +  DG    + + DT+    
Sbjct: 7   IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTSFDNYSAPMVVDGVQVSLGLWDTAGQED 66

Query: 509 RGCLAE-HVRWGDAFAVVYSVCXXXXXXXXXXXXXXXXXTRLPGCAAVTLLGNKRDLEHA 685
              L        D F + YSV                     P  A + L+G K DL   
Sbjct: 67  YDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKHHCPD-APIILVGTKIDLRED 125

Query: 686 RE 691
           RE
Sbjct: 126 RE 127


>AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein
           protein.
          Length = 344

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -2

Query: 107 GPFTRVXRRPRADXLQPG 54
           GP TR  RRP AD  QPG
Sbjct: 40  GPQTRKGRRPVADDQQPG 57


>DQ974166-1|ABJ52806.1|  494|Anopheles gambiae serpin 6 protein.
          Length = 494

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 301 CPNEDDCESYQGGGARKS*EWEICSG 378
           CP +DD E  +GG A KS    + +G
Sbjct: 180 CPRDDDYEDGEGGPAPKSQVIRVANG 205


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,089,327
Number of Sequences: 2352
Number of extensions: 19475
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 68
effective length of database: 404,043
effective search space used: 184243608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)