Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F02_e398_12.seq
         (1583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   5e-09
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)                   55   1e-07
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)                  32   1.1  
SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 31   1.9  
SB_38125| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.9  

>SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 60.1 bits (139), Expect = 5e-09
 Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
 Frame = +1

Query: 214 VSKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTE- 390
           V +AAI G DG+ WA S GF +S+ E  +++   ++ S+      TI G +Y+ L   + 
Sbjct: 7   VQRAAIHGLDGSCWATSSGFSVSQQEAMELLKSLKDGSV---SAKTIGGAKYMMLRNDQE 63

Query: 391 -RIIRAKLGKVGVHCM-KTQQAVVISLYEEPI-QPQQAASVVEKLGDYLITCGY 543
            +I   KL   G  C+  T+QA+VI  YEE         +VVE+L  YL   GY
Sbjct: 64  SKICYLKLKDKGGFCVCLTKQALVIGGYEESAGGAGNCNNVVEQLAQYLKESGY 117


>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
          Length = 571

 Score = 55.2 bits (127), Expect = 1e-07
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
 Frame = +1

Query: 184 VDKQLMASRCVSKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTS-GGVTIAG 360
           VD+ L+ +  V+KA+I G +G  +A S GF +   E   ++A    +   T   GV +  
Sbjct: 450 VDESLLGTSQVAKASIHGLNGERYASSSGFVVLPSEAQVLIAAITKDPSPTYYKGVCLNR 509

Query: 361 TRYIYLS-GTERIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGDYLITC 537
           T+Y  +       +  + G  G   + T Q ++I  Y E + P   ++V EKL DY    
Sbjct: 510 TKYFVIRVDPGHSLYCRKGNEGAVAVLTSQCLLIGAYSEGMTPGCCSAVTEKLADYFRVN 569

Query: 538 GY 543
           G+
Sbjct: 570 GF 571


>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
          Length = 404

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 16/76 (21%), Positives = 33/76 (43%)
 Frame = +1

Query: 292 VAKIVAGFENESLLTSGGVTIAGTRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYE 471
           ++ +V  F + +     G+      Y  +   +  +  K  K G+  +KT   ++++LY 
Sbjct: 1   MSSLVGAFGDSARTRMEGLKFEDVLYECVRADKFSVYGKHDKTGIVAIKTATLILVALYS 60

Query: 472 EPIQPQQAASVVEKLG 519
           + + P       EKLG
Sbjct: 61  QEMSPSICVEASEKLG 76


>SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1554

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = -2

Query: 811 TVXYRNNYFGGSGERTKKSPESAK*S*LHIRLHSCLNSSHDDAINYQISKTNMNGPYHFI 632
           T+ YR  + GG  E+  +  +  K       +++ LN ++ DA  YQ   TN++G   F 
Sbjct: 59  TLLYRQKFMGGYNEKPLQPGKVIKTD----DVYTILNFAYQDAGQYQCKATNLDGETIFT 114

Query: 631 EYTKC 617
           +   C
Sbjct: 115 DPNAC 119


>SB_38125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
 Frame = +1

Query: 361 TRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYE----EPIQPQQAASVVEKLGDYL 528
           +RYI +  +    +  +   GV C K Q ++  SLY+      I P Q  +++ K+G  L
Sbjct: 304 SRYISIPISNYDYKKWVKVTGVRCTK-QDSLTASLYDAYGNSAIAPGQTKNIIIKIG--L 360

Query: 529 ITCGY*RSKCAVI*EYFIR*YFFHREISNCILYIL*SDKDRSYLFLIFDN---LWHRRVM 699
                  + C+ +    I  + F R+     L +    +  S+LF   D+   L H  V+
Sbjct: 361 GNKEDIDTNCSDLEFVAIFSFDFGRD-EKIALKLRCRRRKESFLFTFVDHDGSLQHAAVI 419

Query: 700 S-LSNCVTVCVVTITL 744
             LS C +VC V +TL
Sbjct: 420 EPLSGCTSVCPVLLTL 435


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,564,510
Number of Sequences: 59808
Number of extensions: 558493
Number of successful extensions: 1176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5188097434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)