Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_F01_e390_11.seq
(1582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0174 + 13815478-13815903 139 5e-33
03_01_0066 - 537729-538163 137 3e-32
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 34 0.36
02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114... 31 2.5
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 30 4.4
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 30 4.4
09_02_0036 + 3217163-3217584,3217752-3218322 30 4.4
04_04_1652 - 35066814-35067659 30 5.8
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 30 5.8
>10_07_0174 + 13815478-13815903
Length = 141
Score = 139 bits (337), Expect = 5e-33
Identities = 67/128 (52%), Positives = 89/128 (69%)
Frame = +2
Query: 89 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 268
MGRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGFTTHLMRR
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60
Query: 269 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 448
+ VRGIS+KLQEEERERR ++VPE SALE + I VD +T +ML L +++ G++
Sbjct: 61 IQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQ 120
Query: 449 QPATQGGY 472
Q + Y
Sbjct: 121 QEVSAPTY 128
>03_01_0066 - 537729-538163
Length = 144
Score = 137 bits (331), Expect = 3e-32
Identities = 67/122 (54%), Positives = 88/122 (72%)
Frame = +2
Query: 89 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 268
MGRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRR 60
Query: 269 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 448
+ VRGIS+KLQEEERERR ++VP+ SALE D I VD +T DML L +++ G+ +
Sbjct: 61 IQRGPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VR 119
Query: 449 QP 454
QP
Sbjct: 120 QP 121
>12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 33.9 bits (74), Expect = 0.36
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = +1
Query: 871 PVWNKS--PLLRTGTPPSXGENXSXXAXGPLREPSPYSXFWGPGXRKALNXTPXGXP 1035
P W S P +T TPP + + P R PSP S G ALN T P
Sbjct: 186 PSWRPSTPPSAKTLTPPRRSPSPASTLTPPRRSPSPASRRMSTGSTPALNRTRGPSP 242
>02_04_0449 +
23010099-23010317,23010873-23010934,23011399-23011450,
23011803-23011917,23012024-23012118,23012852-23012958,
23013042-23013156,23014159-23014203,23014324-23014392
Length = 292
Score = 31.1 bits (67), Expect = 2.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 453 GCVSCRPLMLLKSSIFNISLVSESTSMISCSRADT 349
GC + +K+ +F+I LVSE S+I+C A T
Sbjct: 148 GCGNAAVSKNVKNKVFSIDLVSEDPSVIACDMAHT 182
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 30.3 bits (65), Expect = 4.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 628 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 771
L+R + PF SW N +A D+ + L LNG + + LK L
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 30.3 bits (65), Expect = 4.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 628 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 771
L+R + PF SW N +A D+ + L LNG + + LK L
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 4.4
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 566 ITIHWPSFYNVV-TGKTLALPNLIALQH 646
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>04_04_1652 - 35066814-35067659
Length = 281
Score = 29.9 bits (64), Expect = 5.8
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 871 PVWNKSPLLRTGTPPSXGENXSXXAXGPLREP 966
P W+ PLLR GTP S E A +REP
Sbjct: 196 PFWSAQPLLRQGTPSSCPE--CEAAAAMMREP 225
>04_04_0923 +
29441740-29441980,29442321-29442401,29442630-29442719,
29443123-29443203,29443721-29443774,29444062-29444111,
29444542-29444623,29444734-29444838,29445514-29445641,
29445726-29445797,29445887-29445937,29446029-29446100,
29446201-29446278,29446446-29447270,29447648-29448556
Length = 972
Score = 29.9 bits (64), Expect = 5.8
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +2
Query: 251 THLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 430
T LM ++I SQ SI ++E N+V A + +I S T+D+ +D++N
Sbjct: 311 TSLMEQIISSQP---SISEVQQEISTESNFVATPRAFQNSMILTTSRTEDIPFDMDYANT 367
Query: 431 NGLQ 442
N ++
Sbjct: 368 NQVE 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,109,040
Number of Sequences: 37544
Number of extensions: 628902
Number of successful extensions: 1435
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5116529628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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