Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F01_e390_11.seq
         (1582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   137   2e-32
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    31   2.2  
AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical ...    30   5.2  
Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical pr...    29   6.9  
AC024765-6|AAF60526.2|  254|Caenorhabditis elegans Smn (survival...    29   9.1  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  137 bits (331), Expect = 2e-32
 Identities = 67/115 (58%), Positives = 81/115 (70%), Gaps = 3/115 (2%)
 Frame = +2

Query: 89  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 268
           M RVRT             YYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR
Sbjct: 1   MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRR 60

Query: 269 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQD---IIEVDSDTKDMLKMLDFS 424
           +    VRGISIKLQEEERERRDNY+PE+S ++      I+VD+DT DMLK   F+
Sbjct: 61  IERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 15/59 (25%), Positives = 32/59 (54%)
 Frame = +2

Query: 260 MRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNING 436
           +R L   +V  ++ ++  EE+ R       +++  QDI + D+  ++ML+ +  +N NG
Sbjct: 214 IRELNEQRVDFLNAEVALEEKRRNSRIQDMITSAVQDITDKDTKLEEMLRAMPDTNSNG 272


>AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical
           protein C10E2.2 protein.
          Length = 501

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 242 GFTTHLMRRLIHSQVRGISIKLQEEERE 325
           GFT  L  RLI +++R +   ++EEE E
Sbjct: 471 GFTNELSERLIRAEIRAVEDNVEEEEFE 498


>Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical
           protein C03C10.4 protein.
          Length = 244

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 15/37 (40%), Positives = 26/37 (70%)
 Frame = +2

Query: 257 LMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQ 367
           ++ R ++SQ+  +SI L+ E +ER+D+Y   + ALEQ
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALEQ 218


>AC024765-6|AAF60526.2|  254|Caenorhabditis elegans Smn (survival of
           motor neuron)protein interactor protein 1, isoform a
           protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 693 SPFPTVAQPEWRMANCKR*YFVKIRVKFLLNQLIF*PIGRNRQNPL*IKE*TEIGVECC 869
           +P P +   EWR   C++  F + R K  L    F P+  +R N    +E  EI +E C
Sbjct: 79  TPSPLIPSEEWRQEKCRK--FEETRAKMALKIEKFSPMRIDRLNSPEEEEWHEILLEKC 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,361,545
Number of Sequences: 27780
Number of extensions: 517855
Number of successful extensions: 1151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4577094018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)