Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F01_e390_11.seq
         (1582 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)           140   3e-33
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ...   138   7e-33
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ...   138   7e-33
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)           137   2e-32
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi...   136   4e-32
At5g40530.2 68418.m04918 expressed protein contains Pfam profile...    32   1.2  
At5g40530.1 68418.m04919 expressed protein contains Pfam profile...    32   1.2  

>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
          Length = 140

 Score =  140 bits (338), Expect = 3e-33
 Identities = 67/122 (54%), Positives = 88/122 (72%)
 Frame = +2

Query: 89  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 268
           MGRVRT             YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 269 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 448
           +    VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML  L  S+ +G+   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 449 QP 454
           +P
Sbjct: 121 EP 122


>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score =  138 bits (335), Expect = 7e-33
 Identities = 67/122 (54%), Positives = 87/122 (71%)
 Frame = +2

Query: 89  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 268
           MGRVRT             YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 269 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 448
           +    VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML  L  S+  G+   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 449 QP 454
           +P
Sbjct: 121 EP 122


>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score =  138 bits (335), Expect = 7e-33
 Identities = 67/122 (54%), Positives = 87/122 (71%)
 Frame = +2

Query: 89  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 268
           MGRVRT             YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 269 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 448
           +    VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML  L  S+  G+   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 449 QP 454
           +P
Sbjct: 121 EP 122


>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
          Length = 141

 Score =  137 bits (332), Expect = 2e-32
 Identities = 67/122 (54%), Positives = 86/122 (70%)
 Frame = +2

Query: 89  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 268
           MGRVRT             YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 269 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 448
           +    VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML  L  S+  G+   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 449 QP 454
            P
Sbjct: 121 DP 122


>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
           to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
           esculentum]
          Length = 140

 Score =  136 bits (329), Expect = 4e-32
 Identities = 66/117 (56%), Positives = 86/117 (73%)
 Frame = +2

Query: 89  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 268
           MGRVRT             YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 269 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGL 439
           +    VRGIS+KLQEEERERR ++VP+ SA++ D ++VD +T +ML  L  S+I G+
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGI 117


>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 301

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 453 GCVSCRPLMLLKSSIFNISLVSESTSMISCSRADTS 346
           GC   R    +K+ +F+  LVS++ S+I+C  ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177


>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 287

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 453 GCVSCRPLMLLKSSIFNISLVSESTSMISCSRADTS 346
           GC   R    +K+ +F+  LVS++ S+I+C  ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,095,836
Number of Sequences: 28952
Number of extensions: 472074
Number of successful extensions: 1066
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4260257664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)