Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_E12_e477_10.seq
(1454 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 349 8e-95
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 343 9e-93
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 215 1e-84
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 307 4e-82
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 270 5e-71
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 257 6e-67
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 152 1e-66
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 250 9e-65
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 249 1e-64
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 220 8e-56
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 215 2e-54
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 167 6e-40
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 126 1e-27
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 124 8e-27
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 123 1e-26
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 123 1e-26
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 117 7e-25
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 113 1e-23
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 110 8e-23
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 109 2e-22
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 106 1e-21
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 105 3e-21
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 103 9e-21
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 102 2e-20
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 101 5e-20
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 100 8e-20
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 100 2e-19
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 95 3e-18
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 95 5e-18
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 87 8e-16
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 83 2e-14
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 81 5e-14
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 81 9e-14
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 68 5e-10
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.12
UniRef50_Q6Y3G3 Cluster: RecA; n=2; Desulfuromonadales|Rep: RecA... 39 0.38
UniRef50_Q3WHX0 Cluster: Putative uncharacterized protein; n=1; ... 35 4.6
UniRef50_A5NNX2 Cluster: Putative uncharacterized protein; n=1; ... 35 6.1
UniRef50_UPI0000F32FE2 Cluster: UPI0000F32FE2 related cluster; n... 34 8.1
UniRef50_Q9AAE0 Cluster: ISCc2, transposase, fusion; n=1; Caulob... 34 8.1
UniRef50_A3BE82 Cluster: Putative uncharacterized protein; n=1; ... 34 8.1
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 349 bits (859), Expect = 8e-95
Identities = 159/202 (78%), Positives = 177/202 (87%)
Frame = +2
Query: 107 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 286
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 287 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 466
V KIV QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAK
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120
Query: 467 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNL 646
YKLCKV++ G K VP+LVTHDGRT+RYPDPLI NDSVQ+DI++ KI D+IKFDSGNL
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNL 180
Query: 647 CMITGGRNLGRVXTIVRASATP 712
CMITGGRNLGRV T+V P
Sbjct: 181 CMITGGRNLGRVGTVVNRERHP 202
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 343 bits (842), Expect = 9e-93
Identities = 153/202 (75%), Positives = 173/202 (85%)
Frame = +2
Query: 107 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 286
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 287 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 466
V KI QR IK+DGKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAK
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 120
Query: 467 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNL 646
YKLCKVR++ G K +P+LVTHD RT+RYPDPLIKVND++Q+D+ T KI DFIKFD+GNL
Sbjct: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 180
Query: 647 CMITGGRNLGRVXTIVRASATP 712
CM+TGG NLGR+ I P
Sbjct: 181 CMVTGGANLGRIGVITNRERHP 202
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 215 bits (525), Expect(2) = 1e-84
Identities = 99/119 (83%), Positives = 107/119 (89%)
Frame = +2
Query: 110 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 289
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 290 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 466
KI QR IK+DGKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 62 KKICMQRFIKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 123 bits (296), Expect(2) = 1e-84
Identities = 50/83 (60%), Positives = 65/83 (78%)
Frame = +2
Query: 464 KYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGN 643
+YKLCKV+++ G K +P+LVTHD RT+RYPDPLIKVND+V++D+ T KI DFIKFD+ N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 644 LCMITGGRNLGRVXTIVRASATP 712
+CM+TGG NLGR+ I P
Sbjct: 212 MCMVTGGANLGRIGVITNRERHP 234
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 307 bits (754), Expect = 4e-82
Identities = 140/195 (71%), Positives = 163/195 (83%)
Frame = +2
Query: 107 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 286
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 287 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 466
V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK
Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 467 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNL 646
+KLCKVR + G K +PYL T+DGRT+RYPDPLIK ND+++LD+ NKI++FIKFD GN+
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180
Query: 647 CMITGGRNLGRVXTI 691
M+TGGRN GRV I
Sbjct: 181 VMVTGGRNRGRVGVI 195
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 270 bits (663), Expect = 5e-71
Identities = 117/202 (57%), Positives = 152/202 (75%)
Frame = +2
Query: 107 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 286
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 287 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 466
V IVK R IK+DGK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK
Sbjct: 61 VTMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAK 120
Query: 467 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNL 646
+KLCK+ + G ++PY+VTHDGRT+RYP P ++ ND+++L++ T KI+DF+KFD GN
Sbjct: 121 FKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNT 180
Query: 647 CMITGGRNLGRVXTIVRASATP 712
M+ GG +GRV IV+ P
Sbjct: 181 AMMIGGNGMGRVGVIVKREVHP 202
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 257 bits (629), Expect = 6e-67
Identities = 123/202 (60%), Positives = 150/202 (74%)
Frame = +2
Query: 107 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 286
+A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+E
Sbjct: 12 VAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDE 70
Query: 287 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 466
V KI Q IKVDGK+RTD P MDV+SI+K E F LIY + RF +HRITPEE K
Sbjct: 71 VKKICMQWFIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVK 130
Query: 467 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNL 646
YKLCK+R++ K +P+LV HD T+R+PD LIKVND++Q+D+ T KI +KFD+GNL
Sbjct: 131 YKLCKMRKIFVRAKGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNL 189
Query: 647 CMITGGRNLGRVXTIVRASATP 712
C++TGG N GR+ I P
Sbjct: 190 CLVTGGGNWGRIGVITNRERHP 211
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 152 bits (368), Expect(2) = 1e-66
Identities = 64/99 (64%), Positives = 78/99 (78%)
Frame = +2
Query: 416 DVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 595
D KGRF +HRITPEEAKYKL KVR++ G K +P+LVTHD RT+RYPDPLIK+ND++Q+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 596 ISTNKIMDFIKFDSGNLCMITGGRNLGRVXTIVRASATP 712
+ T KI DF KFD+GNLCM+TGG NLGR+ I P
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHP 174
Score = 126 bits (303), Expect(2) = 1e-66
Identities = 57/75 (76%), Positives = 63/75 (84%)
Frame = +2
Query: 107 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 286
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 287 VLKIVKQRLIKVDGK 331
V KI Q IK+DGK
Sbjct: 61 VKKIRMQHFIKMDGK 75
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 250 bits (611), Expect = 9e-65
Identities = 114/209 (54%), Positives = 152/209 (72%)
Frame = +2
Query: 65 IRTRVSFLFKVLFNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVI 244
+R + SF + VLF M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ I
Sbjct: 1 MRRKKSFSWSVLFLMPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINI 60
Query: 245 FLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVK 424
FLR+RLKYALT E + IVK+RL+KVDGKVRT+ YP G MDV+ + K+NELFR+IYD K
Sbjct: 61 FLRDRLKYALTAKEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCK 120
Query: 425 GRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDIST 604
GRF +H I +EA +KL +V + G K +P++VTHDGRT+ Y DP ++V+D+++ +I T
Sbjct: 121 GRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPSVRVHDALKFNIKT 180
Query: 605 NKIMDFIKFDSGNLCMITGGRNLGRVXTI 691
++ IKF G++ M+T G N+GRV TI
Sbjct: 181 GEVESVIKFKVGDVAMVTAGGNVGRVGTI 209
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 249 bits (610), Expect = 1e-64
Identities = 110/196 (56%), Positives = 149/196 (76%)
Frame = +2
Query: 107 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 286
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 287 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 466
L I+K+ I VDGKVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+
Sbjct: 61 SLNILKKNEIYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESM 120
Query: 467 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNL 646
+KLCKV RV+ G K +PY+VTHDGRT+R+P+ LIK NDS+ LD+ NK++DFIKF G+L
Sbjct: 121 FKLCKVIRVSIGSKGIPYIVTHDGRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSL 180
Query: 647 CMITGGRNLGRVXTIV 694
C++ G N+GR+ +
Sbjct: 181 CVVIKGSNIGRIGVFI 196
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 220 bits (537), Expect = 8e-56
Identities = 104/197 (52%), Positives = 129/197 (65%)
Frame = +2
Query: 122 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 301
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 302 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 481
+Q L+ VD R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL K
Sbjct: 63 RQGLVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMK 122
Query: 482 VRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITG 661
V + T VP VTHDG +RYPDP + D++ ++ K +D IK G ++TG
Sbjct: 123 VVNLYTATGRVPVAVTHDGHRIRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTG 182
Query: 662 GRNLGRVXTIVRASATP 712
G N GR+ IV+ P
Sbjct: 183 GANRGRIGEIVKVECHP 199
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 215 bits (526), Expect = 2e-54
Identities = 114/234 (48%), Positives = 149/234 (63%), Gaps = 31/234 (13%)
Frame = +2
Query: 83 FLFKVLFNMARGPKKHLKRLNAPKAWMLD-------------------------KLGGVY 187
F F++ + ARGPKKHLKR+NAPK+WML+ KL +Y
Sbjct: 75 FSFEI-YKKARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIY 133
Query: 188 ----APRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPT 349
A RPS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D
Sbjct: 134 FKKQATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKG 193
Query: 350 YPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVT 529
YP G MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VT
Sbjct: 194 YPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVT 253
Query: 530 HDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITGGRNLGRVXTI 691
HD RT+R+P+P IK+ D+++ D+ NKI +F +SGN+C I G N+GRV I
Sbjct: 254 HDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGII 307
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 167 bits (406), Expect = 6e-40
Identities = 80/195 (41%), Positives = 125/195 (64%)
Frame = +2
Query: 107 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 286
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKE 60
Query: 287 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 466
+ I+ ++ IKV+G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA
Sbjct: 61 LSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEAS 120
Query: 467 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNL 646
Y+L KV + + +PY+V+ G ++R+ DP I + ++++ T+K++++I +
Sbjct: 121 YRLTKVTKKYEN-QGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKV 179
Query: 647 CMITGGRNLGRVXTI 691
++ G+ GRV I
Sbjct: 180 IFVSRGKARGRVGVI 194
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 126 bits (304), Expect = 1e-27
Identities = 70/202 (34%), Positives = 106/202 (52%), Gaps = 8/202 (3%)
Frame = +2
Query: 113 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 292
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 293 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 472
KI++ I +DG R + +PAG MDV+SI + +E + +++D GR ++ + ++ K
Sbjct: 64 KIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVK 121
Query: 473 LCKVRRVATGPKSVPYLVTHDGR--------TLRYPDPLIKVNDSVQLDISTNKIMDFIK 628
LCK+ L HDGR + + + K DSV + I I +
Sbjct: 122 LCKIVNKTVVKGGNIQLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVA 181
Query: 629 FDSGNLCMITGGRNLGRVXTIV 694
F G L ITGG+++G IV
Sbjct: 182 FGEGKLAYITGGKHVGEFAKIV 203
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 124 bits (298), Expect = 8e-27
Identities = 73/208 (35%), Positives = 112/208 (53%), Gaps = 15/208 (7%)
Frame = +2
Query: 116 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 292
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 293 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 472
KI+ + I VDG VR +P +P G MDVV I +T + +R++ + R + I+ EEA+ K
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVK 126
Query: 473 LCKVRRVATGPKSVPYLVTHDGRT--LRYPDP------LIKVNDSVQLDI------STNK 610
+C+++ + HDG+ + DP + V DS+ L++ + K
Sbjct: 127 VCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWK 186
Query: 611 IMDFIKFDSGNLCMITGGRNLGRVXTIV 694
++D I F+ G GR+ G V +V
Sbjct: 187 VVDHIPFEEGVWVYAMTGRHSGEVGRVV 214
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 123 bits (297), Expect = 1e-26
Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 10/205 (4%)
Frame = +2
Query: 107 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 283
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 284 EVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEE 460
E K++ + +VDG VR D +P GFMDV+ + T E FR++ Y VK F +H I EE
Sbjct: 61 EARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEE 119
Query: 461 AKYKLCKVRRVATGPKSVPYLVTHDGRTL--RYPDP------LIKVNDSVQLDISTNKIM 616
K ++ T L HDGR + R DP + + D++ + + +I
Sbjct: 120 GDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIK 179
Query: 617 DFIKFDSGNLCMITGGRNLGRVXTI 691
IKF G + +I GGRN+GRV +
Sbjct: 180 GHIKFGEGAIAIIVGGRNVGRVGVV 204
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 123 bits (296), Expect = 1e-26
Identities = 62/192 (32%), Positives = 101/192 (52%)
Frame = +2
Query: 116 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 295
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 296 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 475
I+ + VDG+V D +P GFMD++ I KT E++R++ D KGR +++I EE KL
Sbjct: 65 IINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKL 122
Query: 476 CKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMI 655
CK+ +T + HDG+ + + V D + L + ++I + + G +I
Sbjct: 123 CKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLI 182
Query: 656 TGGRNLGRVXTI 691
TGG++ G + T+
Sbjct: 183 TGGKHTGELGTV 194
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 117 bits (282), Expect = 7e-25
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 8/196 (4%)
Frame = +2
Query: 113 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 292
+G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E
Sbjct: 6 KGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEAR 65
Query: 293 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 472
+I+ R+I+VDG+V TD +P G MDV+ I + +R++ D + I PEEA YK
Sbjct: 66 RILASRVIEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYK 125
Query: 473 LCKVRRVATGPKSVPYLVTHDGRTL-------RYPDPL-IKVNDSVQLDISTNKIMDFIK 628
L ++RR T HDGR + Y + K D++ + I I+ +
Sbjct: 126 LAQIRRKMTVKNGDLQFTLHDGRNVLIRKGSEAYSTAISYKTYDALLITIPRQSIVSHVP 185
Query: 629 FDSGNLCMITGGRNLG 676
F+ G L ++ GRN+G
Sbjct: 186 FEVGTLAIVVDGRNVG 201
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 113 bits (272), Expect = 1e-23
Identities = 71/192 (36%), Positives = 96/192 (50%), Gaps = 4/192 (2%)
Frame = +2
Query: 128 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 304
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 305 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 484
+ +KVDG VR D +P G MDV+ I T E++R++ D + + I+ EEA KL +V
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRV 122
Query: 485 RRVATGPKSVPYLVTHDGR---TLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMI 655
L HDGR T IK DSV D+ I I G ++
Sbjct: 123 EGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVV 182
Query: 656 TGGRNLGRVXTI 691
G N+G T+
Sbjct: 183 IHGSNVGFSGTL 194
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 110 bits (265), Expect = 8e-23
Identities = 58/195 (29%), Positives = 101/195 (51%)
Frame = +2
Query: 107 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 286
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 287 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 466
K+VK + V+GK +P MD +S N+ +R++ G+ T++ I E
Sbjct: 61 AQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKD 120
Query: 467 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNL 646
K+CKV ++ ++T D R L+ IKV DS+ + ++I+ +KF+ G+L
Sbjct: 121 LKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSL 180
Query: 647 CMITGGRNLGRVXTI 691
C+IT G++LG + I
Sbjct: 181 CLITRGKHLGTIAVI 195
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 109 bits (261), Expect = 2e-22
Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 3/192 (1%)
Frame = +2
Query: 128 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 307
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 308 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 487
+KVDGKVR D YP G MDV+ + NE +R+I D RI EA K+C++
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIE 122
Query: 488 RVATGPKSVPYLVTHDGRTL---RYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMIT 658
L HDGR + + + SV +++ K+MD+ +
Sbjct: 123 DKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAF 182
Query: 659 GGRNLGRVXTIV 694
G N+GR T++
Sbjct: 183 NGVNVGRHGTLI 194
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 106 bits (255), Expect = 1e-21
Identities = 64/218 (29%), Positives = 101/218 (46%)
Frame = +2
Query: 128 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 307
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 308 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 487
+ VDGKVR D Y G D +SI N +R++ + G+F H + +A K+CK+
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIV 122
Query: 488 RVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITGGR 667
L HDG T+ + K DSV L + KI + G+L M+T G+
Sbjct: 123 NKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGK 181
Query: 668 NLGRVXTIVRASATPXXSTXGTXRTPPXHXSXPVKQXV 781
+ G + + + T P ++Q V
Sbjct: 182 HSGEIGKVKEIKVVRSSAPNTVVITTPEGDFETIEQYV 219
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 105 bits (252), Expect = 3e-21
Identities = 57/189 (30%), Positives = 94/189 (49%)
Frame = +2
Query: 128 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 307
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 308 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 487
+ VDG R D +P G DV+++ NE +R++ D KGR ++++ E KLC++
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRIN 121
Query: 488 RVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITGGR 667
T L +DG + + DS+ L I ++ +KF+ GNL M+ GG+
Sbjct: 122 NKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQ 180
Query: 668 NLGRVXTIV 694
+ G I+
Sbjct: 181 HSGETGKIM 189
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 103 bits (248), Expect = 9e-21
Identities = 67/200 (33%), Positives = 99/200 (49%), Gaps = 5/200 (2%)
Frame = +2
Query: 125 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 304
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILH 61
Query: 305 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 484
QR + V+G+ D G D+VSI K + +R+ DVKG I E AK +LCK+
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKI 121
Query: 485 RRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTN-----KIMDFIKFDSGNLC 649
R T L G + D K DSV + + T+ +I+D + GN+
Sbjct: 122 RNKTTVKGGKVQLNFAFGANV-LADNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVA 180
Query: 650 MITGGRNLGRVXTIVRASAT 709
MI GG++ G+V IV T
Sbjct: 181 MIVGGKHSGKVGRIVEIIRT 200
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 102 bits (245), Expect = 2e-20
Identities = 61/191 (31%), Positives = 93/191 (48%)
Frame = +2
Query: 134 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 313
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 314 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRV 493
+KVDGK + + GFMDV+ I E +R++Y+ +G + + T E A KL KVR
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSK 123
Query: 494 ATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITGGRNL 673
P + L THDGRT D KV D + + KI + IK GN IT G ++
Sbjct: 124 VIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHV 183
Query: 674 GRVXTIVRASA 706
+ TI + A
Sbjct: 184 NQTGTISKIEA 194
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 101 bits (242), Expect = 5e-20
Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 2/192 (1%)
Frame = +2
Query: 122 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 298
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 299 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLC 478
+ + VDG+ D +P G DV++I + NE +R++ D +G+ + +I EEA K
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYG 125
Query: 479 K-VRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMI 655
K +R+V+ + Y +T DGRT D K + V +I KI + I + I
Sbjct: 126 KIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYI 183
Query: 656 TGGRNLGRVXTI 691
G++ GR+ I
Sbjct: 184 IRGKHTGRIGVI 195
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 100 bits (240), Expect = 8e-20
Identities = 53/188 (28%), Positives = 93/188 (49%)
Frame = +2
Query: 128 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 307
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 308 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 487
+ VDG R D +P G MD+++I N +R++ D K R ++++ A KLC++
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
Query: 488 RVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITGGR 667
+ + + +DG + DS+ L + K++ IK++ GNL MI GG
Sbjct: 123 GKTSIKEGKIQMRLNDGVNI-IGSNNYNTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGS 181
Query: 668 NLGRVXTI 691
+ G V +I
Sbjct: 182 HAGEVGSI 189
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 99.5 bits (237), Expect = 2e-19
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 1/190 (0%)
Frame = +2
Query: 128 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 307
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 308 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 487
R + VDG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDVLTVGE--DSFRCILDVNGKLRYRSISDKAAASKLCRVM 122
Query: 488 RVATGPKSVPYLVTHDGRTLRYPD-PLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITGG 664
+T + HDGR + D L D++ + + + F G +TGG
Sbjct: 123 GKSTITDGKTQIHLHDGRNILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKGATAYLTGG 182
Query: 665 RNLGRVXTIV 694
++G +V
Sbjct: 183 SHIGITAKVV 192
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 95.5 bits (227), Expect = 3e-18
Identities = 54/187 (28%), Positives = 96/187 (51%), Gaps = 1/187 (0%)
Frame = +2
Query: 134 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 313
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 314 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VRR 490
+KVDG++ D +P GFMDV+SI+ + ++YD KG+ I + P KL K V++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKK 126
Query: 491 VATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITGGRN 670
G + L HDG+T+ I +D + + I +I + +K G+ ITGG +
Sbjct: 127 TIIGTGKI-QLGFHDGKTIVTDRKDINTSDVLLMKIPDLEIENVLKIAEGDKVFITGGSH 185
Query: 671 LGRVXTI 691
+G + TI
Sbjct: 186 VGELATI 192
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 94.7 bits (225), Expect = 5e-18
Identities = 64/188 (34%), Positives = 88/188 (46%), Gaps = 5/188 (2%)
Frame = +2
Query: 128 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 307
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 308 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 487
+ VDGKVR D YP G MDVV I + R+I D T I+ E+AKYK ++
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIM 122
Query: 488 RVATGPKSVPYLVTHDGRT-LRYPDPLIKVN----DSVQLDISTNKIMDFIKFDSGNLCM 652
T V L DGR L + L + N ++++++ KI G M
Sbjct: 123 NKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAM 182
Query: 653 ITGGRNLG 676
I GGRN G
Sbjct: 183 IIGGRNAG 190
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 87.4 bits (207), Expect = 8e-16
Identities = 59/186 (31%), Positives = 89/186 (47%)
Frame = +2
Query: 134 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 313
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 314 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRV 493
+ VDGKV + GFMD +++ + L + YD KG+ I E KL +V+
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTVSGNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGK 123
Query: 494 ATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITGGRNL 673
+ HDG T+ IK DSV + I +I+D +KF GN ITGG ++
Sbjct: 124 TYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHV 183
Query: 674 GRVXTI 691
G + TI
Sbjct: 184 GEIATI 189
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 82.6 bits (195), Expect = 2e-14
Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 1/196 (0%)
Frame = +2
Query: 128 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 307
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 308 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 487
+ ++GK +D P G D+++ + E +R+ GR + I P+ A+ KL K+
Sbjct: 63 DNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIV 122
Query: 488 RVATGPKSVPYLVTHDGRTLRY-PDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITGG 664
L HDG TL D DS+ + +++ +++ G L G
Sbjct: 123 TKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDG 182
Query: 665 RNLGRVXTIVRASATP 712
+ G V + TP
Sbjct: 183 AHAGEVGEVEEIQVTP 198
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 81.4 bits (192), Expect = 5e-14
Identities = 52/189 (27%), Positives = 82/189 (43%)
Frame = +2
Query: 125 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 304
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 305 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 484
++VDG RT + G MDVV + T +++R++ +I E K+C+V
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMVPSGGAILKPVKIEAAEKDRKICRV 127
Query: 485 RRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITGG 664
+ + HDGR+L D + V DS + + KI+ + + G ++T G
Sbjct: 128 TSKTSISGGRTQIGFHDGRSL-ISDEKVSVGDSCLVQVPGQKILKVARMEKGAHAVVTRG 186
Query: 665 RNLGRVXTI 691
N G TI
Sbjct: 187 TNAGSTGTI 195
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 80.6 bits (190), Expect = 9e-14
Identities = 51/190 (26%), Positives = 91/190 (47%), Gaps = 3/190 (1%)
Frame = +2
Query: 134 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 313
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 314 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRV 493
+ ++G + TD D++S K ++ + ++ D KGR + I+ + AK +L KV
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANK 123
Query: 494 ATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTN---KIMDFIKFDSGNLCMITGG 664
T + G + K DS+ + I+ + + + GN+ +I GG
Sbjct: 124 TTIKGGKTQINLTSGANF-IGEENCKGKDSLVIGIAGDDRFAVQQHFPYAVGNMAIIIGG 182
Query: 665 RNLGRVXTIV 694
++ + +V
Sbjct: 183 QHTMKTGKLV 192
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 68.1 bits (159), Expect = 5e-10
Identities = 44/110 (40%), Positives = 55/110 (50%)
Frame = -2
Query: 697 ANDGXDATQIPAAGDHAEVAGVELDEVHDLVGGDVELHRVVHLDXXXXXXXXXXXXRHQV 518
A D DAT + GDHA+ A VELD + DLV DV+ + V LD +
Sbjct: 84 ALDHPDATGVVTTGDHAQSADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDA 143
Query: 517 RHALGAGRDAPHLAQLVLGFFRCDTVDSEPSFHIIY*TE*LICFLNGYNV 368
RHAL APHLAQLVL F D V +E S ++ E I +G +V
Sbjct: 144 RHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIALFDGDDV 193
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 40.3 bits (90), Expect = 0.12
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +2
Query: 200 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 379
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 380 IEKTNELFRLIYDVKG 427
IE +++ L+ + KG
Sbjct: 158 IEDMDQVLNLLSNYKG 173
>UniRef50_Q6Y3G3 Cluster: RecA; n=2; Desulfuromonadales|Rep: RecA -
Geobacter chapelleii
Length = 171
Score = 38.7 bits (86), Expect = 0.38
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +1
Query: 460 SQVQAVQGAARRDRPQERAVP-GDARRAHAPVPGPAHQG-ERLGAARHLHQQDHGLHQVR 633
S++ GA R+R ++ +P G A H P P AH+ +++ RHLHQ D +
Sbjct: 19 SRLGRCPGAPGRNRGRDGRLPHGTAGPPHVPSPAQAHRHHQQIQLLRHLHQPDPHEDRRH 78
Query: 634 LRQPLHD 654
+RQP +D
Sbjct: 79 VRQPRND 85
>UniRef50_Q3WHX0 Cluster: Putative uncharacterized protein; n=1;
Frankia sp. EAN1pec|Rep: Putative uncharacterized
protein - Frankia sp. EAN1pec
Length = 643
Score = 35.1 bits (77), Expect = 4.6
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +1
Query: 487 ARRDRPQERAVPGDARRAH----APVPGPAHQGERLGAARHLHQQDHGLHQVRLRQP 645
ARR R R +P RRAH PVPG H+ R R H HQ R +P
Sbjct: 157 ARRGRADRRRLPHRPRRAHRARTRPVPGRGHRRVRRRPRRRRHPHPRYRHQRRRLRP 213
>UniRef50_A5NNX2 Cluster: Putative uncharacterized protein; n=1;
Methylobacterium sp. 4-46|Rep: Putative uncharacterized
protein - Methylobacterium sp. 4-46
Length = 105
Score = 34.7 bits (76), Expect = 6.1
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 481 GAARRDRPQERAVPGDARRAHAPVPG 558
G RRDRPQER P RRA P+ G
Sbjct: 70 GGDRRDRPQERLAPRSLRRAERPLTG 95
>UniRef50_UPI0000F32FE2 Cluster: UPI0000F32FE2 related cluster; n=1;
Bos taurus|Rep: UPI0000F32FE2 UniRef100 entry - Bos
Taurus
Length = 706
Score = 34.3 bits (75), Expect = 8.1
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +1
Query: 424 RKVHYPPYHT*RSQVQAVQGAAR-RDRPQERAVPGDARRAHAPVPGP---AHQGER 579
R V PP H + VQG R RP+ R G A RA P PGP H+G R
Sbjct: 140 RTVWMPPCHPASRRGDPVQGLPHPRPRPRSRRA-GPAHRARGPAPGPPPRPHRGTR 194
>UniRef50_Q9AAE0 Cluster: ISCc2, transposase, fusion; n=1;
Caulobacter vibrioides|Rep: ISCc2, transposase, fusion -
Caulobacter crescentus (Caulobacter vibrioides)
Length = 841
Score = 34.3 bits (75), Expect = 8.1
Identities = 22/55 (40%), Positives = 25/55 (45%)
Frame = +1
Query: 463 QVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQDHGLHQ 627
Q A QGA R Q+R V ARRA A V GE++ R H D HQ
Sbjct: 600 QASAAQGAIARQHAQQRLV---ARRADAKVDHAGRGGEQVVLRRQAHAHDIAGHQ 651
>UniRef50_A3BE82 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 247
Score = 34.3 bits (75), Expect = 8.1
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 457 RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQDHGLHQVRL 636
R+ +++ + R R RA G+A R H PVP + RH H G ++RL
Sbjct: 100 RAPLRSRRARLLRRREDRRAAAGEAHRVHHPVPDHRERAPPHRVPRH-HPDGQGRRRLRL 158
Query: 637 RQ 642
R+
Sbjct: 159 RR 160
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 758,950,698
Number of Sequences: 1657284
Number of extensions: 15565267
Number of successful extensions: 52458
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 49821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52406
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 153246200500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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