Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_E12_e477_10.seq
(1454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 302 4e-82
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 301 9e-82
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 300 1e-81
01_05_0710 + 24492337-24493053 31 3.0
03_05_0145 + 21254448-21255488 29 6.9
01_01_1101 + 8731427-8732938 29 6.9
10_01_0099 - 1202668-1203023,1203097-1206037 29 9.2
01_05_0674 - 24187820-24188713,24188809-24189204 29 9.2
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 302 bits (742), Expect = 4e-82
Identities = 136/194 (70%), Positives = 160/194 (82%)
Frame = +2
Query: 110 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 289
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 290 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 469
+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKF 137
Query: 470 KLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLC 649
KLCKVR V G K +P+L T+DGRT+RYPDPLIK ND++++D+ TNKI+DFIKFD GN+
Sbjct: 138 KLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIV 197
Query: 650 MITGGRNLGRVXTI 691
M+TGGRN GRV I
Sbjct: 198 MVTGGRNTGRVGVI 211
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 301 bits (739), Expect = 9e-82
Identities = 134/195 (68%), Positives = 161/195 (82%)
Frame = +2
Query: 107 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 286
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 287 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 466
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 467 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNL 646
+KLCKVR V G K +PYL T+DGRT+RYPDPLIK ND++++D+ TNKI+DFIKFD GN+
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNV 180
Query: 647 CMITGGRNLGRVXTI 691
M+TGGRN GRV I
Sbjct: 181 VMVTGGRNTGRVGVI 195
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 300 bits (737), Expect = 1e-81
Identities = 133/195 (68%), Positives = 161/195 (82%)
Frame = +2
Query: 107 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 286
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 287 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 466
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 467 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNL 646
+KLCKVR V G K +PYL T+DGRT+RYPDP+IK ND++++D+ TNKI+DFIKFD GN+
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNV 180
Query: 647 CMITGGRNLGRVXTI 691
M+TGGRN GRV I
Sbjct: 181 VMVTGGRNTGRVGVI 195
>01_05_0710 + 24492337-24493053
Length = 238
Score = 30.7 bits (66), Expect = 3.0
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = -3
Query: 666 LPPVIMQRLPESNLMKSMILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATR 487
L P +RLP S L L M + T +F L++ + +RPS + LLG + +R
Sbjct: 76 LLPGSTERLPFSPLAAH---LASMPTLTPAFALLTAIRHHPLRPSPLPLATPLLGHLLSR 132
Query: 486 RTLHSLYLASSGVIRWI 436
R ++ V+RW+
Sbjct: 133 RRARE----AASVVRWL 145
>03_05_0145 + 21254448-21255488
Length = 346
Score = 29.5 bits (63), Expect = 6.9
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 478 QGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHL 600
+G ARR P++R A A P PA R G HL
Sbjct: 117 KGRARRRTPEQRRPKEAAGNGRARSPSPASAQRRYGGGEHL 157
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.5 bits (63), Expect = 6.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -2
Query: 292 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 158
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>10_01_0099 - 1202668-1203023,1203097-1206037
Length = 1098
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 542 TLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMIT 658
T R PD + ++ LD+S N + I GNL MIT
Sbjct: 123 TGRMPDEISELQRLTMLDLSYNNLTGHIPASVGNLTMIT 161
>01_05_0674 - 24187820-24188713,24188809-24189204
Length = 429
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 484 AARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQD 612
AA R P A A AP P P+HQ ++ +RH D
Sbjct: 149 AANRRAPAAAAKHRPAADQFAPPPAPSHQWAKIKRSRHATDHD 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,921,428
Number of Sequences: 37544
Number of extensions: 470356
Number of successful extensions: 1619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1618
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4629241092
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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