Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E12_e477_10.seq
         (1454 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             336   2e-92
SB_37498| Best HMM Match : MATH (HMM E-Value=1.8e-28)                  32   1.00 
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      29   7.0  
SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.0  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  336 bits (826), Expect = 2e-92
 Identities = 154/204 (75%), Positives = 176/204 (86%), Gaps = 1/204 (0%)
 Frame = +2

Query: 83   FLFKVLFN-MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNR 259
            FLF +L   MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNR
Sbjct: 416  FLFSLLAAIMARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNR 475

Query: 260  LKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTI 439
            LKYAL G EV KIVKQRLIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +
Sbjct: 476  LKYALNGEEVKKIVKQRLIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAV 535

Query: 440  HRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMD 619
            HRIT EEAKYKL +VRRV  G K VPY+VTHD RT+RYPDP IKVND+V +DI T K++D
Sbjct: 536  HRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVID 595

Query: 620  FIKFDSGNLCMITGGRNLGRVXTI 691
            +IKFD+GN+ M+ GGRN+GRV  +
Sbjct: 596  YIKFDTGNMAMVVGGRNMGRVGMV 619


>SB_37498| Best HMM Match : MATH (HMM E-Value=1.8e-28)
          Length = 562

 Score = 32.3 bits (70), Expect = 1.00
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +1

Query: 463 QVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQDH--GLHQVRL 636
           Q+Q V+ A R    +   +  +A R  AP  GP   G  +   R   + +H   LH ++L
Sbjct: 333 QLQEVEAAIREQDRRLGMIENEASRGAAPSSGPGSMGGTMALERRQDRNEHQLALHDIQL 392

Query: 637 RQPLHD 654
            +  HD
Sbjct: 393 AE--HD 396


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +2

Query: 455  EEAKYKLCKVRRVATGPKSVPYLVTHDG---RTLRYPDPLIKVNDSVQLDISTNKIMDFI 625
            E+A   +C++ R+   P+    LV   G   ++L      I   +  Q+ +     +  +
Sbjct: 2971 EDAMQHVCRINRILESPRGNALLVGVGGSGKQSLARLAAFISALEVFQITLRKGYGIPDM 3030

Query: 626  KFDSGNLCMITGGRNLGRVXTIVRA 700
            K D  NLC   G +N+G V  +  A
Sbjct: 3031 KLDLANLCTKAGLKNIGTVFLLTDA 3055


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 16/72 (22%), Positives = 35/72 (48%)
 Frame = +2

Query: 437 IHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIM 616
           I  +TP+    K C+V R++TGP    +++  +G      +  +++    ++ +  + + 
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345

Query: 617 DFIKFDSGNLCM 652
            F  F+ G  CM
Sbjct: 346 -FPDFEKGVACM 356


>SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -3

Query: 429 LPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRF 253
           + F   ++  NS  FS       P G+   + +FPS + +    ILS    +S ++S+F
Sbjct: 23  MSFAEVMRLVNSMDFSTVIFDTAPTGHTLRLLSFPSVIEKSLGKILSLKNSISPFISQF 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,564,412
Number of Sequences: 59808
Number of extensions: 504317
Number of successful extensions: 1525
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4683373023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)