Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_E12_e477_10.seq
(1454 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 274 1e-73
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr... 31 2.0
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr... 31 2.0
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 30 3.6
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 30 3.6
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 29 6.2
M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical pr... 29 8.2
M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical pr... 29 8.2
AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical ... 29 8.2
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 274 bits (671), Expect = 1e-73
Identities = 127/203 (62%), Positives = 152/203 (74%)
Frame = +2
Query: 113 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 292
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 293 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 472
KI+ QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +K
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121
Query: 473 LCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCM 652
LCKV+ V T K VP L T DGRT+RYPDP +KVND++ +IST KI D +KF+ GNL
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181
Query: 653 ITGGRNLGRVXTIVRASATPXXS 721
+TGGRN+GRV I P S
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGAS 204
>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
protein F11A10.4 protein.
Length = 1646
Score = 31.1 bits (67), Expect = 2.0
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = -3
Query: 462 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 304
A+S +R +V+ F I+ + +FS + T +NP+G S R P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214
>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
protein F11A10.4 protein.
Length = 1646
Score = 31.1 bits (67), Expect = 2.0
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = -3
Query: 462 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 304
A+S +R +V+ F I+ + +FS + T +NP+G S R P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 30.3 bits (65), Expect = 3.6
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = +1
Query: 439 PPYHT*RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAAR--HLHQQD 612
PP H ++ R ++P V G + P P H + G R ++HQQ
Sbjct: 423 PPQHMQAQRLWGGPQPQRMNQPMMAQVGGRPGQYIMGHPPPMHHQMQQGPPRMMYMHQQH 482
Query: 613 HGLHQV 630
H +HQV
Sbjct: 483 HPMHQV 488
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 30.3 bits (65), Expect = 3.6
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = +1
Query: 439 PPYHT*RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAAR--HLHQQD 612
PP H ++ R ++P V G + P P H + G R ++HQQ
Sbjct: 423 PPQHMQAQRLWGGPQPQRMNQPMMAQVGGRPGQYIMGHPPPMHHQMQQGPPRMMYMHQQH 482
Query: 613 HGLHQV 630
H +HQV
Sbjct: 483 HPMHQV 488
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.5 bits (63), Expect = 6.2
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +2
Query: 425 GRFTIHRITPEEAKYKLCKVRRVATGPKSVP-----YLVTHDGRTLR-YP 556
G+ + R+T E Y+ CK+++ A K VP Y+V H R ++ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical
protein ZK370.3b protein.
Length = 921
Score = 29.1 bits (62), Expect = 8.2
Identities = 9/31 (29%), Positives = 23/31 (74%)
Frame = -2
Query: 331 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 239
+P H ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597
>M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical
protein ZK370.3a protein.
Length = 927
Score = 29.1 bits (62), Expect = 8.2
Identities = 9/31 (29%), Positives = 23/31 (74%)
Frame = -2
Query: 331 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 239
+P H ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597
>AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical
protein Y71A12B.6 protein.
Length = 316
Score = 29.1 bits (62), Expect = 8.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 420 TSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMR 310
T+ N F FS T S+NP GY+ V TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,769,555
Number of Sequences: 27780
Number of extensions: 344470
Number of successful extensions: 1080
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4162671200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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