Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E12_e477_10.seq
         (1454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    24   3.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.8  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   6.6  

>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 19/62 (30%), Positives = 25/62 (40%)
 Frame = +1

Query: 460 SQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQDHGLHQVRLR 639
           SQ +      RR+   E A PG+ R  + P P P H   RL     L  +      V + 
Sbjct: 106 SQPRPPHPRLRREAEPE-AEPGNNRPVYIPQPRPPH--PRLRREAELEAEPGNNRPVYIS 162

Query: 640 QP 645
           QP
Sbjct: 163 QP 164



 Score = 23.4 bits (48), Expect = 5.0
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = +1

Query: 493 RDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQDHGLHQVRLRQP 645
           R   +  A PG+ R  + P P P H   RL     L  +      V + QP
Sbjct: 60  RREAEPEAEPGNNRPVYIPQPRPPH--PRLRREAELEAEPGNNRPVYISQP 108



 Score = 22.6 bits (46), Expect = 8.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 460 SQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAH 567
           SQ +      RR+   E A PG+ R  + P P P H
Sbjct: 162 SQPRPPHPRLRREAEPE-AEPGNNRPVYIPQPRPPH 196


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 554 PDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITGGRNLG 676
           PD L  +     LD+  N+I +F      NL  +TG R +G
Sbjct: 447 PDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIG 487


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 493 RDRPQERAVPGDARRAHAPVPGPAH 567
           R R +  A PG+ R  + P P P H
Sbjct: 115 RLRREPEAEPGNNRPVYIPQPRPPH 139



 Score = 23.0 bits (47), Expect = 6.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 493 RDRPQERAVPGDARRAHAPVPGPAH 567
           R R +  A PG+ R  + P P P H
Sbjct: 141 RLRREPEAEPGNNRPVYIPQPRPPH 165



 Score = 22.6 bits (46), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 493 RDRPQERAVPGDARRAHAPVPGPAH 567
           R   + +A PG+ R  + P P P H
Sbjct: 61  RREAEPKAEPGNNRPIYIPQPRPPH 85



 Score = 22.6 bits (46), Expect = 8.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 493 RDRPQERAVPGDARRAHAPVPGPAH 567
           R   +  A PG+ R  + P P P H
Sbjct: 89  RREAESEAEPGNNRPVYIPQPRPPH 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,994
Number of Sequences: 438
Number of extensions: 4519
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 50601375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)