Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E12_e477_10.seq
         (1454 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   308   8e-84
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             307   1e-83
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   307   1e-83
At4g23310.1 68417.m03359 receptor-like protein kinase, putative ...    31   1.4  
At4g38440.1 68417.m05432 expressed protein                             31   1.9  
At2g26730.1 68415.m03206 leucine-rich repeat transmembrane prote...    31   1.9  
At2g20210.1 68415.m02363 leucine-rich repeat family protein cont...    29   5.8  
At1g50200.1 68414.m05629 aminoacyl-tRNA synthetase family protei...    29   7.6  

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  308 bits (755), Expect = 8e-84
 Identities = 140/195 (71%), Positives = 163/195 (83%)
 Frame = +2

Query: 107 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 286
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 287 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 466
           V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 467 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNL 646
           +KLCKVR +  G K +PYL T+DGRT+RYPDPLIK ND+++LD+  NKI++FIKFD GN+
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 647 CMITGGRNLGRVXTI 691
            M+TGGRN GRV  I
Sbjct: 181 VMVTGGRNRGRVGVI 195


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  307 bits (754), Expect = 1e-83
 Identities = 140/195 (71%), Positives = 163/195 (83%)
 Frame = +2

Query: 107 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 286
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 287 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 466
           V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 467 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNL 646
           +KLCKVR +  G K +PYL T+DGRT+RYPDPLIK ND+++LD+  NKI++FIKFD GN+
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 647 CMITGGRNLGRVXTI 691
            M+TGGRN GRV  I
Sbjct: 181 VMVTGGRNRGRVGVI 195


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  307 bits (754), Expect = 1e-83
 Identities = 140/195 (71%), Positives = 163/195 (83%)
 Frame = +2

Query: 107 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 286
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 287 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 466
           V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 467 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNL 646
           +KLCKVR +  G K +PYL T+DGRT+RYPDPLIK ND+++LD+  NKI++FIKFD GN+
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 647 CMITGGRNLGRVXTI 691
            M+TGGRN GRV  I
Sbjct: 181 VMVTGGRNRGRVGVI 195


>At4g23310.1 68417.m03359 receptor-like protein kinase, putative
           similar to receptor-like protein kinase 4 (gi:13506745),
           5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 830

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -3

Query: 333 TFP--STLMRRCFTILST-SLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 178
           TFP  ST M    T+LST S P ++Y + F+   T+GKH   + G    RG  +P
Sbjct: 151 TFPRSSTYMTNLITLLSTLSSPSASYSTGFQNA-TAGKHPDRVTGLFNCRGDVSP 204


>At4g38440.1 68417.m05432 expressed protein
          Length = 1465

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
 Frame = +2

Query: 134  KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL----VIFLRNRLKYALTGNEVLKIV 301
            +R+  P  W L  +  V++ + STGP +  E L +    V FL      +  G+    +V
Sbjct: 1140 QRMPLPPHWFLSAISAVHSGKTSTGPPESTELLEVAKAGVFFLAGLESSSGFGSLPSPVV 1199

Query: 302  KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRF 433
               L+    K     T     MD++  + T  L+  + ++ G+F
Sbjct: 1200 SVPLV---WKFHALSTVLLVGMDIIEDKNTRNLYNYLQELYGQF 1240


>At2g26730.1 68415.m03206 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 658

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 530 HDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITG 661
           H+  +  +P    ++N+ ++LDIS+N     I F   NL  +TG
Sbjct: 124 HNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTG 167


>At2g20210.1 68415.m02363 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 604

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = -3

Query: 486 RTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGS 340
           RTLHSL+   S + R+   + F++ +  ++S + S+D +  N +G++ +
Sbjct: 291 RTLHSLHFGDSNLDRYFARMVFSTLLD-SSSNLSSLDLSENNISGWLST 338


>At1g50200.1 68414.m05629 aminoacyl-tRNA synthetase family protein
            contains Pfam profiles: PF01411 tRNA synthetases class II
            (A), PF02272 DHHA1 domain
          Length = 1003

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 739  PXRAXCXXXRGGARANDGXDATQIPAAGDHA 647
            P +  C   +GG  +  G DA+Q+ AA D A
Sbjct: 964  PLKGRCGKGKGGLASGQGTDASQVQAALDMA 994


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,119,723
Number of Sequences: 28952
Number of extensions: 329506
Number of successful extensions: 1011
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3855436800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)