Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E11_e469_09.seq
         (1425 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    27   0.34 
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    26   0.59 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   3.2  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   3.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   4.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   4.2  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   4.2  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 603 EIXXXXHVC*XIHXPDSNNSVWFINHNVSIRQYQPILFHYKPRTIGKRYRLSRK 442
           +I     V   I+ P+S   VWF N     RQ Q    H + +++ K  +L  K
Sbjct: 95  DIFMREEVALKINLPESRVQVWFKNRRAKCRQQQK--QHNQQQSVEKSSKLKNK 146


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 26.2 bits (55), Expect = 0.59
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 531 NHNVSIRQYQPILFHYKPRTIGKRYRLSRKQIHPSAIFYLY 409
           N N  + +Y+P L    P    K YR  RK+I   A  Y Y
Sbjct: 205 NCNHLMTKYEPDLDMNHPGFADKEYRARRKEIAEIAFAYKY 245


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 791 PPPPPPP 811
           PPPPPPP
Sbjct: 731 PPPPPPP 737


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 727 GGXRXGGXGXXXGGGGGXE 671
           GG R GG     G GGG E
Sbjct: 92  GGGRGGGRDGDRGDGGGEE 110


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +3

Query: 681 PPPPXXXPXPPXRXPPPPXXXPXP 752
           PP P   P PP     P    P P
Sbjct: 231 PPHPGLSPHPPHLSSHPAIVTPGP 254


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +3

Query: 681 PPPPXXXPXPPXRXPPPPXXXPXP 752
           PP P   P PP     P    P P
Sbjct: 123 PPHPGLSPHPPHLSSHPAIVTPGP 146


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 603 EIXXXXHVC*XIHXPDSNNSVWFINHNVSIRQ 508
           +I     V   I+ P+S   VWF N     RQ
Sbjct: 153 DIFMREEVAVKINLPESRVQVWFKNRRAKCRQ 184


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,558
Number of Sequences: 336
Number of extensions: 5671
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 42403950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)