Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E10_e461_10.seq
         (1519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...   276   5e-75
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...   256   4e-69
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    27   6.8  

>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 439

 Score =  276 bits (677), Expect = 5e-75
 Identities = 144/298 (48%), Positives = 188/298 (63%), Gaps = 1/298 (0%)
 Frame = +2

Query: 113  MPIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGK 292
            M I+ + ARQI+DSRGNPTVEVDL TE G+ RA VPSGASTG+ EALE+RD  K+++ GK
Sbjct: 1    MAIQKVFARQIYDSRGNPTVEVDLTTETGIHRAIVPSGASTGIWEALEMRDGDKTKWGGK 60

Query: 293  GVLTAIKNINDIIAPELLSKNIEVTEQREIDQLMLKLDGTENKSKLGANAILGVSLXXXX 472
            GVL A+ N+N+IIAP ++  N++VT+Q+  D+ +LKLDGTENKSKLGANAILGVS+    
Sbjct: 61   GVLKAVGNVNNIIAPAVVKANLDVTDQKAADEFLLKLDGTENKSKLGANAILGVSMAICR 120

Query: 473  XXXXXXDVPLYKHLADLSGNK-DIVLPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFS 649
                   +PL+K++A+  G K   VLPVP+FNV+NGGSHAG  LA QEFMILPTGA SFS
Sbjct: 121  AGAAQKKLPLWKYIAENFGTKGPYVLPVPSFNVLNGGSHAGGDLAFQEFMILPTGAPSFS 180

Query: 650  EAMRMGSEVYHYLKKXIKEKFGLDSTAVGDEGGFAPTSXTTRKLSISFRMLSXRLDXLAK 829
            EAMR G+E YH LK   K+++G  +  VGDEGG AP   T ++          +     K
Sbjct: 181  EAMRWGAETYHTLKSIAKKRYGSSAGNVGDEGGIAPDLQTPQEALDLIVEAINKAGYEGK 240

Query: 830  FALAWMXLLLNSFKMGPMTLTSXILTXTPXNICLLKKLTXXXLGXXKDFPMGXLXXPF 1003
              +         +  G   L        P N    ++LT   +   K +P+  +  PF
Sbjct: 241  IKIGLDVASSEFYVDGKYDLDIKAAKPKPENKLTYQQLTDLYVELSKKYPIVSIEDPF 298


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score =  256 bits (628), Expect = 4e-69
 Identities = 122/221 (55%), Positives = 160/221 (72%), Gaps = 1/221 (0%)
 Frame = +2

Query: 119 IKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGV 298
           I+ I +R I+DSRGNPTVEV+L TELG FR+ VPSGASTG  EA ELRDN K+++ GKGV
Sbjct: 4   IQKIYSRSIYDSRGNPTVEVELTTELGTFRSMVPSGASTGEWEAKELRDNDKNKWGGKGV 63

Query: 299 LTAIKNINDIIAPELLSKNIEVTEQREIDQLMLKLDGTENKSKLGANAILGVSLXXXXXX 478
             A+ N+N+II P L+  +I++T+QR ID+ M+KLDGT +KSKLGAN+I+GVS+      
Sbjct: 64  TIAVHNVNNIIGPALVKSDIKITDQRGIDEFMIKLDGTNDKSKLGANSIVGVSMAVARAA 123

Query: 479 XXXXDVPLYKHLADLSGNKDI-VLPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEA 655
                +PLY+++  L+G+K    +PVP+FNV+NGG HAG  LA QEFMI+P  A +FSE 
Sbjct: 124 AAFLKIPLYEYIGKLAGSKTTECIPVPSFNVLNGGRHAGGDLAFQEFMIMPIKAPTFSEG 183

Query: 656 MRMGSEVYHYLKKXIKEKFGLDSTAVGDEGGFAPTSXTTRK 778
           +R GSEVYH LK   K+K+G  +  VGDEGG AP   T  +
Sbjct: 184 LRWGSEVYHTLKALAKKKYGASAGNVGDEGGIAPDLTTAEE 224



 Score = 53.2 bits (122), Expect = 9e-08
 Identities = 27/79 (34%), Positives = 41/79 (51%)
 Frame = +1

Query: 742 GWFCSNIQXNKEALYLIQDAIXQAGXXGKICIGMDXAASEFFQDGAYDLDFXNPNLYPXE 921
           G    ++   +EAL L+ +AI +AG  GK+ IG D AASE +    YDLDF + +  P  
Sbjct: 213 GGIAPDLTTAEEALDLVNEAIKEAGYDGKVKIGFDVAASELYNGKLYDLDFKSEHPKPEN 272

Query: 922 YLPLEKTDXXXLGFXQRFP 978
            L  +K         +++P
Sbjct: 273 KLDYKKLYEKYSALIEKYP 291


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 615 NSCIANLLPAWDPPLITLNAGTGSTMSLFPDKSAKC 508
           NSC   L+P  D P+ ++  G+  +M +  +    C
Sbjct: 156 NSCTHELIPEEDVPMSSITVGSDGSMLIAGNNKGNC 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,468,571
Number of Sequences: 5004
Number of extensions: 87405
Number of successful extensions: 270
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 850352646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)