Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_E10_e461_10.seq
(1519 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0) 132 9e-31
SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20) 106 4e-23
SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07) 79 9e-15
SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.45
SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3) 29 7.4
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_27902| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3) 29 7.4
SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.8
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4) 29 9.8
>SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)
Length = 284
Score = 132 bits (318), Expect = 9e-31
Identities = 57/76 (75%), Positives = 69/76 (90%)
Frame = +2
Query: 494 VPLYKHLADLSGNKDIVLPVPAFNVINGGSHAGNKLAMQEFMILPTGASSFSEAMRMGSE 673
VPLYK++A L+GN ++LPVPAFNVINGGSHAGNKLAMQEFM+LPTGAS+F EAMRMG+E
Sbjct: 26 VPLYKYIAGLAGNNQVILPVPAFNVINGGSHAGNKLAMQEFMLLPTGASNFREAMRMGAE 85
Query: 674 VYHYLKKXIKEKFGLD 721
+Y LKK +KEK+G+D
Sbjct: 86 IYQNLKKVVKEKYGID 101
Score = 36.7 bits (81), Expect = 0.049
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 775 EALYLIQDAIXQAGXXGKICIGMDXAASEFFQDGAYDLD 891
+ L L++ AI +AG GKI IGMD AAS + A+D D
Sbjct: 101 DGLELLKVAIEKAGYTGKISIGMDVAASVVSIEDAFDQD 139
>SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)
Length = 115
Score = 106 bits (255), Expect = 4e-23
Identities = 49/75 (65%), Positives = 61/75 (81%)
Frame = +2
Query: 197 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINDIIAPELLSKNIEVTEQR 376
G FRAAVPSGASTG++EALELRD S++ GKGV A+ N+N II P L+SKN++VT Q
Sbjct: 40 GTFRAAVPSGASTGIYEALELRDKDASKFLGKGVSQAVNNVNTIIGPALVSKNVDVTAQE 99
Query: 377 EIDQLMLKLDGTENK 421
+ID +ML+LDGTENK
Sbjct: 100 DIDNMMLQLDGTENK 114
>SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)
Length = 133
Score = 79.0 bits (186), Expect = 9e-15
Identities = 37/65 (56%), Positives = 49/65 (75%)
Frame = +2
Query: 563 NVINGGSHAGNKLAMQEFMILPTGASSFSEAMRMGSEVYHYLKKXIKEKFGLDSTAVGDE 742
N++NGG+HA + + +QEFMI P GA SF +A G+ VYH LKK +K+K GL +T +GDE
Sbjct: 2 NILNGGAHADSDVDIQEFMIAPIGAESFKQAYEWGAAVYHSLKKVLKDK-GL-ATGLGDE 59
Query: 743 GGFAP 757
GGFAP
Sbjct: 60 GGFAP 64
Score = 45.2 bits (102), Expect = 1e-04
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +1
Query: 742 GWFCSNIQXNKEALYLIQDAIXQAGXX-GK-ICIGMDXAASEFFQDGAYDLD 891
G F N+ N AL LI DAI AG GK + + +D AASEFF+DG Y +
Sbjct: 60 GGFAPNLPSNAAALDLILDAIKAAGFEPGKDVALALDVAASEFFEDGKYTFE 111
>SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 33.5 bits (73), Expect = 0.45
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Frame = +2
Query: 440 AILGVSLXXXXXXXXXXDVPLYKHLADL-----SGNKDIVLPVPAFNVINGGSHAGNKLA 604
A+LGVS+ + +++HLA+ SG++ +P+P +++ G A K
Sbjct: 112 AVLGVSMATVIAGSMLKKMEVFEHLANTFLEEPSGSQ--CMPLPVMTLLSSGKLASGKQN 169
Query: 605 M-QEFMILPTGASSFSEA 655
M +E +ILP S S+A
Sbjct: 170 MIKEVLILPKPGESTSKA 187
>SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)
Length = 416
Score = 29.5 bits (63), Expect = 7.4
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = -1
Query: 361 FNILRKQFRCNDVINVFDSCQNTFSMVFTFDVIS*FQSLMDTS*SSRRYCSTEQTQFCHQ 182
FN++ K C+ +DS + + + D + ++S+ S + + +E
Sbjct: 63 FNLMYKYMICDGDSKSYDSIWDQYGVC---DTCNKYESMSRASTEYKEWLKSEDYVEWES 119
Query: 181 VYFD-SRVATRIKDLTCFDRLDRHVGYQMYYFQ 86
+ D S R+ L C + + +G +Y+FQ
Sbjct: 120 SHLDGSADCNRVVKLDCIGHVQKRMGKALYHFQ 152
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.5 bits (63), Expect = 7.4
Identities = 18/76 (23%), Positives = 19/76 (25%)
Frame = +2
Query: 1067 PPXPXLTXPPPXKXXXXXXAXXPXXXXXXXXXXRPXXXXPXXPXXPXPXXXXXXXPXXPX 1246
PP P PPP + P P P P P P P
Sbjct: 918 PPPPLPPPPPPIQTTRPTVPTTPTTQASTTRPTPPPPTSALPP--PIPATQVPPPPLPPL 975
Query: 1247 PXPXPXXXXXXXPXXP 1294
P P P P P
Sbjct: 976 PPPPPPVQTTTAPTLP 991
>SB_27902| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)
Length = 493
Score = 29.5 bits (63), Expect = 7.4
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = -1
Query: 361 FNILRKQFRCNDVINVFDSCQNTFSMVFTFDVIS*FQSLMDTS*SSRRYCSTEQTQFCHQ 182
FN++ K C+ +DS + + + D + ++S+ S + + +E
Sbjct: 318 FNLMYKYMICDGDSKSYDSIWDQYGVC---DTCNKYESMSRASTEYKEWLKSEDYVEWES 374
Query: 181 VYFD-SRVATRIKDLTCFDRLDRHVGYQMYYFQ 86
+ D S R+ L C + + +G +Y+FQ
Sbjct: 375 SHLDGSADCNRVVKLDCIGHVQKRMGKALYHFQ 407
>SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2033
Score = 29.1 bits (62), Expect = 9.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 242 HEALELRDNIKSEYHGKGVLTAIKNINDIIAPELLSKNIEVTE 370
H+A ++RD +G+ + IN ++AP + S++ +TE
Sbjct: 330 HQAQDVRDATSKALYGRLFSWIVNKINHLLAPSIESRDQHLTE 372
>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
Length = 186
Score = 29.1 bits (62), Expect = 9.8
Identities = 29/136 (21%), Positives = 29/136 (21%)
Frame = -2
Query: 1473 GXRXXGXGXXXXGGGXXXXXKXXXXXXXXGXXXXXGGXXXXXXXXXXXXXGXGXXXXXXW 1294
G G G GGG G GG G G
Sbjct: 40 GGATGGHGGATGGGGGATGG-----GATGGGGGATGGGGGATGGHGGATGGGGGATGDGG 94
Query: 1293 GXXGXXXXXXXGXGXGXGXXGXXXXXXXGXGXXGXXGXXXXGRXXXXXXXXXXGXXAXXX 1114
G G G G G G G G G G G G
Sbjct: 95 GATGGGGGATGGGGGATG--GHGGATGGGVGATGGHGGATGGH---GGATGGHGGATGGG 149
Query: 1113 XXFXXGGGXVRXGXGG 1066
GGG G GG
Sbjct: 150 GGATGGGGGATGGGGG 165
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,592,291
Number of Sequences: 59808
Number of extensions: 679681
Number of successful extensions: 2034
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1953
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4929866340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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