Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E09_e453_09.seq
         (1540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.74 
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    28   4.0  
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   6.9  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    27   9.1  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    27   9.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 15/51 (29%), Positives = 18/51 (35%)
 Frame = +2

Query: 761 PXXHPXGEXXLXPPPXNXXPXPTXPXLXXSXXPAXPSXPXPPPXPXTXXXA 913
           P   P G     P P +    P  P    +  P  P+ P PPP P     A
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAA 486


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 315 PPWISSRLSGWGLPIP 362
           P W  SR   WGLPIP
Sbjct: 479 PEWCISRQRAWGLPIP 494


>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 90

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 589 PCNVX-PTVISLXLSPXXLLNP 651
           PCN+  P ++S+ LSP  +L+P
Sbjct: 9   PCNIFRPLILSMHLSPVSILSP 30


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +3

Query: 252 SCQWTPSL*KLFRIATQCSAAPPWISSRLSGWGLPIP 362
           S  W P   +  R A     A  W  SR   WG PIP
Sbjct: 428 STHWVPQNIRDKRFANWLKNARDWNISRNRYWGTPIP 464


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 334 GCQVGVCRYHHPXTS 378
           GC + VCRY  P TS
Sbjct: 203 GCYISVCRYFRPGTS 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,180,479
Number of Sequences: 5004
Number of extensions: 51074
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 864227864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)