Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_E09_e453_09.seq
(1540 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.4
SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_20965| Best HMM Match : Fz (HMM E-Value=3.1) 31 3.3
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4) 29 9.9
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4) 29 9.9
>SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 31.9 bits (69), Expect = 1.4
Identities = 22/86 (25%), Positives = 22/86 (25%)
Frame = -3
Query: 887 GGXGXXRGXRGGXXXXGEXXWXXGXXXGGXGXGXXPPXGGXXETXGXXXFGXXEXXSGGX 708
GG G G GG G G G G G GG G G GG
Sbjct: 248 GGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGG 307
Query: 707 XXAXQKXXFFSWGXPXTSGGFKRXXG 630
G T GG G
Sbjct: 308 GATGVGGGATGGGGGATGGGVGATGG 333
Score = 31.9 bits (69), Expect = 1.4
Identities = 21/80 (26%), Positives = 21/80 (26%)
Frame = -3
Query: 887 GGXGXXRGXRGGXXXXGEXXWXXGXXXGGXGXGXXPPXGGXXETXGXXXFGXXEXXSGGX 708
GG G G GG G G G G G GG G G GG
Sbjct: 269 GGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGVGGGATGGGGGATGGGV 328
Query: 707 XXAXQKXXFFSWGXPXTSGG 648
G T GG
Sbjct: 329 GATGGGGGATGGGGGVTGGG 348
Score = 31.9 bits (69), Expect = 1.4
Identities = 21/80 (26%), Positives = 21/80 (26%)
Frame = -3
Query: 887 GGXGXXRGXRGGXXXXGEXXWXXGXXXGGXGXGXXPPXGGXXETXGXXXFGXXEXXSGGX 708
GG G G GG G G G G G GG G G GG
Sbjct: 276 GGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGVGGGATGGGGGATGGGVGATGGGG 335
Query: 707 XXAXQKXXFFSWGXPXTSGG 648
G T GG
Sbjct: 336 GATGGGGGVTGGGGGATGGG 355
Score = 29.5 bits (63), Expect = 7.5
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = -3
Query: 887 GGXGXXRGXRGGXXXXGEXXWXXGXXXGGXGXGXXPPXGGXXETXGXXXFGXXEXXSGG 711
GG G G GG G G G G G GG G G SGG
Sbjct: 304 GGGGGATGVGGGATGGGGGATGGGVGATGGGGGATGGGGGVTGGGGGATGGGGGPGSGG 362
>SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 31.5 bits (68), Expect = 1.9
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -1
Query: 355 GKPQPDNRE-LIQGGAAEHCVAILNNFYNDGVHWHDVACHHVKPFVCEEN-DALLKYVRY 182
G+P + + L+ E CV I +N+ V W D+ C P+VCE++ D L + +
Sbjct: 109 GEPNDKHYDRLLPRCTGEDCVQI--KIWNNTVTWADLGCETKLPYVCEKSRDLYLSFAAW 166
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 31.1 bits (67), Expect = 2.5
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +2
Query: 761 PXXHPXGEXXLXPPPXNXXPXPTXPXLXXSXXPAXPSXPXPPPXP 895
P P PPP P P + P P P PPP P
Sbjct: 54 PPSPPAAAPAAPPPPAAAPAAPPPPAAPPAAPPPPPPLPAPPPPP 98
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 31.1 bits (67), Expect = 2.5
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 797 PPPXNXXPXPTXPXLXXSXXPAXPSXPXPPPXP 895
PPP N P P P P + P PPP P
Sbjct: 348 PPPTNNPPSPPPPTNNTPPPPPPTNKPPPPPPP 380
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 797 PPPXNXXPXPTXPXLXXSXXPAXPSXPXPPPXP 895
PPP N P P P P + P PPP P
Sbjct: 358 PPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPP 390
Score = 29.5 bits (63), Expect = 7.5
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 797 PPPXNXXPXPTXPXLXXSXXPAXPSXPXPPPXP 895
PPP N P P P P + P PPP P
Sbjct: 368 PPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPP 400
Score = 29.5 bits (63), Expect = 7.5
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 797 PPPXNXXPXPTXPXLXXSXXPAXPSXPXPPPXP 895
PPP N P P P P + P PPP P
Sbjct: 378 PPPTNGPPPPPPPTNGPPPPPPPTNGPPPPPPP 410
>SB_20965| Best HMM Match : Fz (HMM E-Value=3.1)
Length = 529
Score = 30.7 bits (66), Expect = 3.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 328 LIQGGAAEHCVAILNNFYNDGVHWHDVACH 239
L+ G+ H ++++ +N+ VH HDV C+
Sbjct: 266 LVPYGSRNHAMSVVTECFNEYVHRHDVRCY 295
>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
Length = 184
Score = 29.1 bits (62), Expect = 9.9
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +2
Query: 773 PXGEXXLXPPPXNXXPXPTXPXLXXSXXPAXPSXPXPPPXPXT 901
P L PPP P P P + P P PP P T
Sbjct: 124 PPPTGTLPPPPVTPPPGPETPPPPDTPAPPVPPTEAPPTAPPT 166
>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
Length = 186
Score = 29.1 bits (62), Expect = 9.9
Identities = 23/90 (25%), Positives = 26/90 (28%), Gaps = 4/90 (4%)
Frame = -3
Query: 887 GGXGXXRGXRGGXXXXGEXXWXXGXXXGGXGX----GXXPPXGGXXETXGXXXFGXXEXX 720
GG G G GG G G GG G G GG G G
Sbjct: 44 GGHGGATGGGGGATGGGATGGGGGATGGGGGATGGHGGATGGGGGATGDGGGATGGGGGA 103
Query: 719 SGGXXXAXQKXXFFSWGXPXTSGGFKRXXG 630
+GG A + G +GG G
Sbjct: 104 TGGGGGATGGHGGATGGGVGATGGHGGATG 133
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,082,424
Number of Sequences: 59808
Number of extensions: 455214
Number of successful extensions: 1592
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5012030779
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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