Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E09_e453_09.seq
         (1540 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M10938-1|AAA36153.1|  493|Homo sapiens protein ( Human epidermal...    32   6.5  
BC122558-1|AAI22559.1|  578|Homo sapiens keratin 77 protein.           32   6.5  
BC118598-1|AAI18599.1|  345|Homo sapiens KRT1B protein protein.        32   6.5  
AJ564104-1|CAD91892.1|  578|Homo sapiens keratin 1b protein.           32   6.5  

>M10938-1|AAA36153.1|  493|Homo sapiens protein ( Human epidermal
           67-kDa type II keratin mRNA. ).
          Length = 493

 Score = 31.9 bits (69), Expect = 6.5
 Identities = 26/89 (29%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
 Frame = -3

Query: 887 GGXGXXRGXRG-GXXXXGEXXWXXGXXXGGXGXGXXPPXGGXXETXGXXXFGXXEXXSGG 711
           GG G  RG  G G    G      G   GG G G            G    G     SGG
Sbjct: 392 GGGGGGRGSYGSGGSSYGSGGSSYGSGGGGGGHGSYGSGSSSGGYRGGSG-GGGGGSSGG 450

Query: 710 XXXAXQKXXFFSWGXPXTSGGFKRXXGLS 624
                      S G   +SGG K   G S
Sbjct: 451 RGSGGGSSGGSSGGRGSSSGGVKSSGGSS 479


>BC122558-1|AAI22559.1|  578|Homo sapiens keratin 77 protein.
          Length = 578

 Score = 31.9 bits (69), Expect = 6.5
 Identities = 18/47 (38%), Positives = 19/47 (40%)
 Frame = -2

Query: 900 VXGXGGGXGXEGXAGXXEXXRXGXVGXGXXLXGGGXRXXSPXGWXSG 760
           V G  GG G  G  G       G  G G    GGG R  S  G+ SG
Sbjct: 496 VNGGAGGGGSYGSGGYGGGS-GGGYGGGRSYRGGGARGGSGGGYGSG 541


>BC118598-1|AAI18599.1|  345|Homo sapiens KRT1B protein protein.
          Length = 345

 Score = 31.9 bits (69), Expect = 6.5
 Identities = 18/47 (38%), Positives = 19/47 (40%)
 Frame = -2

Query: 900 VXGXGGGXGXEGXAGXXEXXRXGXVGXGXXLXGGGXRXXSPXGWXSG 760
           V G  GG G  G  G       G  G G    GGG R  S  G+ SG
Sbjct: 263 VNGGAGGGGSYGSGGYGGGS-GGGYGGGRSYRGGGARGGSGGGYGSG 308


>AJ564104-1|CAD91892.1|  578|Homo sapiens keratin 1b protein.
          Length = 578

 Score = 31.9 bits (69), Expect = 6.5
 Identities = 18/47 (38%), Positives = 19/47 (40%)
 Frame = -2

Query: 900 VXGXGGGXGXEGXAGXXEXXRXGXVGXGXXLXGGGXRXXSPXGWXSG 760
           V G  GG G  G  G       G  G G    GGG R  S  G+ SG
Sbjct: 496 VNGGAGGGGSYGSGGYGGGS-GGGYGGGRSYRGGGARGGSGGGYGSG 541


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,628,323
Number of Sequences: 237096
Number of extensions: 2704706
Number of successful extensions: 9338
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8689
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22965027146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)