Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E09_e453_09.seq
         (1540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical pr...    33   0.71 
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    29   6.6  
AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a...    29   6.6  
AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a...    29   6.6  

>Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical
           protein T01C3.7 protein.
          Length = 352

 Score = 32.7 bits (71), Expect = 0.71
 Identities = 24/71 (33%), Positives = 25/71 (35%)
 Frame = -2

Query: 894 GXGGGXGXEGXAGXXEXXRXGXVGXGXXLXGGGXRXXSPXGWXSGNXRXPLXWGPXXXFR 715
           G GGG    G  G     R G  G G    GGG R  S  G   G  R     G    FR
Sbjct: 9   GGGGGGFRGGRGGDRGGSRGGFGGGGRGGYGGGDR-GSFGGGDRGGFRGGRGGGDRGGFR 67

Query: 714 XDXXGXXKGXF 682
               G  +G F
Sbjct: 68  GGRGGGDRGGF 78


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 800  PPXNXXPXPTXPXLXXSXXPAXPSXPXPPPXP 895
            PP    P P+ P +  +  P     P PPP P
Sbjct: 1701 PPITQSPVPSEPVVVRTPSPVPQPTPPPPPPP 1732


>AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform b protein.
          Length = 309

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 22/80 (27%), Positives = 25/80 (31%)
 Frame = -3

Query: 887 GGXGXXRGXRGGXXXXGEXXWXXGXXXGGXGXGXXPPXGGXXETXGXXXFGXXEXXSGGX 708
           GG G   G  GG    G      G   G  G G     GG  +  G   +G       G 
Sbjct: 198 GGPGAY-GGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGG 256

Query: 707 XXAXQKXXFFSWGXPXTSGG 648
               Q+     WG P   GG
Sbjct: 257 WGGPQQQQQGGWGGPQQGGG 276


>AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform d protein.
          Length = 347

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 22/80 (27%), Positives = 25/80 (31%)
 Frame = -3

Query: 887 GGXGXXRGXRGGXXXXGEXXWXXGXXXGGXGXGXXPPXGGXXETXGXXXFGXXEXXSGGX 708
           GG G   G  GG    G      G   G  G G     GG  +  G   +G       G 
Sbjct: 236 GGPGAY-GGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGG 294

Query: 707 XXAXQKXXFFSWGXPXTSGG 648
               Q+     WG P   GG
Sbjct: 295 WGGPQQQQQGGWGGPQQGGG 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,219,794
Number of Sequences: 27780
Number of extensions: 362047
Number of successful extensions: 1304
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4431789446
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)