Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E08_e445_10.seq
         (1552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    29   1.3  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   9.2  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    27   9.2  

>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 459 RCLEEWFFEFGYVIPNSTNTWQSVIESAPES 551
           R ++ WFFE       ST+T++SV+++A +S
Sbjct: 219 REIQSWFFELHSKFCLSTSTYESVVQAAQDS 249


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 165  ILCNQVVTTILSLYPLFVIYLYKHKMY 85
            ++C     ++L + PLF +YLY    Y
Sbjct: 1038 VICYSAPLSLLLIVPLFFLYLYNRAYY 1064


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -1

Query: 730 IFERMHINSKLYRLVNA*YC*GINYM*NNLTREVVISRSPSKNFVSITT 584
           +FE  HINS  Y  +N  +   + ++   +   +++ R P   FV+ +T
Sbjct: 115 LFEDTHINSNQYNDINTLFY--VGFVIGQIPGHMLLQRFPVSKFVAAST 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,497,249
Number of Sequences: 5004
Number of extensions: 84625
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 872156560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)