Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E08_e445_10.seq
         (1552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)                    56   1e-07
SB_11438| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.029

>SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)
          Length = 636

 Score = 55.6 bits (128), Expect = 1e-07
 Identities = 22/30 (73%), Positives = 27/30 (90%)
 Frame = +3

Query: 258 NWLNLRDADSGKILWQYNEDMSNPEVEHEA 347
           NW+NLRDAD+GK+LWQ +ED+S P VEHEA
Sbjct: 570 NWMNLRDADTGKVLWQGSEDLSLPGVEHEA 599


>SB_11438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 37.5 bits (83), Expect = 0.029
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +3

Query: 366 LKCRVVSRELNFS-SIESMDRFRLEQKVLFKGRCLEEWFFEFGYVIPNSTNTWQSVIE 536
           LK + V   + F+   + +  FR+ ++  +  + L+ + FEFG+ IPNS NT + + E
Sbjct: 121 LKLKTVGATVEFTVGDKPVTNFRMVERHYYHEKLLKSFDFEFGFCIPNSKNTCEHIYE 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,139,553
Number of Sequences: 59808
Number of extensions: 614353
Number of successful extensions: 1141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5058981887
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)