Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E08_e445_10.seq
         (1552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.43 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   3.1  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    24   3.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   4.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   4.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   7.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   7.1  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   7.1  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    23   9.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   9.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   9.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   9.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   9.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.43
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 105 LYKHKMYKWPSCRIXC 58
           LY H + KWP C + C
Sbjct: 277 LYGHGVCKWPGCEVIC 292



 Score = 23.0 bits (47), Expect = 7.1
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +3

Query: 288 GKILWQYNEDMSNPEVEHEARVPKRILKCRVVSRELNFSSIESMDRFRLE 437
           G  +W+ ++    PE    + VPK +    V SR  + +    +D   L+
Sbjct: 219 GLPMWK-SDTSDGPESHQNSNVPKSVAGLNVSSRRSDMNGTTPLDEKPLD 267


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 643 DYFTYNLFPSNIMHLLVCII*SLYAFFQKYKCQ 741
           +Y+ +NL  S+++ L++ +   L  F+Q+Y  Q
Sbjct: 69  NYYLFNLAVSDLLFLILGLPFELSVFWQQYPWQ 101


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 937 NXXPHNNXXXNSYQKXFN*NILNLE 863
           N   HNN    +Y K    NI+N+E
Sbjct: 320 NKTIHNNNNYKNYNKKLYYNIINIE 344


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 870 IWKXXGYFLNGKCMYIR*ILI 808
           IW+   YF NGK  Y+  I +
Sbjct: 117 IWRPDTYFYNGKHSYVHTITV 137


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 870 IWKXXGYFLNGKCMYI 823
           IWK   YF NGK  Y+
Sbjct: 85  IWKPDTYFYNGKHSYL 100


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 925 HNNXXXNSYQKXFN*NILNLE 863
           +NN   N+Y K    NI+N+E
Sbjct: 100 NNNYNNNNYNKKLYYNIINIE 120


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 925 HNNXXXNSYQKXFN*NILNLE 863
           +NN   N+Y K    NI+N+E
Sbjct: 100 NNNYNNNNYNKKLYYNIINIE 120


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 949 KXXHNXXPHNNXXXNSYQKXF 887
           K  HN   +NN   N+Y+K +
Sbjct: 88  KTIHNNNNYNNNNYNNYKKLY 108


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 480 FEFGYVIPNSTNTWQSVIESAPESQMMPANVLNG 581
           FEFG    N     QS ++  P  ++ P   +NG
Sbjct: 92  FEFGKEYKNGFIKGQSEVQRGPGGRLSPYFGING 125


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 925 HNNXXXNSYQKXFN*NILNLE 863
           +NN   N+Y+K +   I+N+E
Sbjct: 105 YNNNYNNNYKKLYKNYIINIE 125


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 925 HNNXXXNSYQKXFN*NILNLE 863
           +NN   N+Y+K +   I+N+E
Sbjct: 105 YNNNYNNNYKKLYKNYIINIE 125


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 486 FGYVIPNSTNTWQSVIESAPESQMMPA 566
           F  +  N+   W S++  +PE+Q + A
Sbjct: 330 FNLIDQNAVGCWNSLLPYSPENQAVVA 356


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 678 HAFTSLYNLEFICILSKI 731
           + FT+L N  F+C+ S I
Sbjct: 5   YVFTTLINAAFLCLASTI 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 317,755
Number of Sequences: 438
Number of extensions: 6517
Number of successful extensions: 31
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54429375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)