Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E07_e437_09.seq
         (1499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    62   1e-11
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    46   8e-07
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    34   0.004
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    32   0.015
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    31   0.019
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    31   0.026
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      30   0.045
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    24   3.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    24   3.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    24   3.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    24   3.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   6.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   9.0  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 62.1 bits (144), Expect = 1e-11
 Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 4/175 (2%)
 Frame = +1

Query: 244 CSKSVYEAKEAI---KNGNLKDNFYECPQCNILLNHPKRFLIHTKWHTFGINKKTELARK 414
           CSKS +  KE +   +  + K+  Y+C  C     H  +   H + HT     K  +  K
Sbjct: 125 CSKS-FSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRHMRIHTGERPHKCTVCSK 183

Query: 415 REMRKEARIIEKMKSEEETKPKIFSCKDCDKIFNTKSSLKNHRHRNHSTRGVERKKRPRV 594
             ++    +I  M++    KP +  CK C K F     LK H  R H+       ++P  
Sbjct: 184 TFIQSGQLVIH-MRTHTGEKPYV--CKACGKGFTCSKQLKVHT-RTHTG------EKP-- 231

Query: 595 TVSSFQCPDCTKRFKHKHSLDKHRDTHL-EKTHPCAECPKKFGSQVLLXMHMKSH 756
               + C  C K F + H L  H+  H  EK + C  C + FGS+  + +H+K+H
Sbjct: 232 ----YTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTH 282



 Score = 57.6 bits (133), Expect = 3e-10
 Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 2/176 (1%)
 Frame = +1

Query: 289 NLKDNFYECPQCNILLNHPKRFLIHTKWH-TFGINKKTELARKREMRKEARIIEKMKSEE 465
           N+++  Y+C  C    +    +  H + H   G +        +     AR+    ++  
Sbjct: 56  NIEEKTYQCLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTHT 115

Query: 466 ETKPKIFSCKDCDKIFNTKSSLKNHRHRNHSTRGVERKKRPRVTVSSFQCPDCTKRFKHK 645
             KP  + C+ C K F+ K +L  HR        +  K+RP      ++C  C + F+H 
Sbjct: 116 GEKP--YQCEYCSKSFSVKENLSVHRR-------IHTKERP------YKCDVCERAFEHS 160

Query: 646 HSLDKHRDTHL-EKTHPCAECPKKFGSQVLLXMHMKSHERVLRGPTFRCPYXGKGY 810
             L +H   H  E+ H C  C K F     L +HM++H        + C   GKG+
Sbjct: 161 GKLHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMRTH---TGEKPYVCKACGKGF 213


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 46.0 bits (104), Expect = 8e-07
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 607 FQCPDCTKRFKHKHSLDKHRDTHL-EKTHPCAECPKKFGSQVLLXMHMKSH 756
           F+CP+C KRF   H L  H   H  EK + C+ C ++F     L  H++ H
Sbjct: 10  FECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVH 60



 Score = 29.9 bits (64), Expect = 0.059
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
 Frame = +1

Query: 469 TKPKIFSCKDCDKIFNTKSSLKNHRHRNHSTRGVERKKRPRVTVSSFQCPDCTKRFKHKH 648
           T  K F C +C K F     LK H  R H+       ++P      + C  C ++F    
Sbjct: 5   TGEKPFECPECHKRFTRDHHLKTHM-RLHT------GEKP------YHCSHCDRQFVQVA 51

Query: 649 SLDKHRDTHL-EKTHPCAECPKK 714
           +L +H   H  E+ + C  C  K
Sbjct: 52  NLRRHLRVHTGERPYACELCAAK 74



 Score = 26.2 bits (55), Expect = 0.73
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 670 THL-EKTHPCAECPKKFGSQVLLXMHMKSH 756
           TH  EK   C EC K+F     L  HM+ H
Sbjct: 3   THTGEKPFECPECHKRFTRDHHLKTHMRLH 32



 Score = 22.6 bits (46), Expect = 9.0
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = +1

Query: 307 YECPQCNILLNHPKRFLIHTKWHT 378
           +ECP+C+           H + HT
Sbjct: 10  FECPECHKRFTRDHHLKTHMRLHT 33


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 33.9 bits (74), Expect = 0.004
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +1

Query: 643 KHSLDKHRDTHL-EKTHPCAECPKKFGSQVLLXMHMKSHERVLRGPTFRCPYXGK 804
           KH L+ H   H   K   C +C     ++ +L  H+KSH  V +     C Y  K
Sbjct: 1   KHHLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATK 55



 Score = 26.6 bits (56), Expect = 0.55
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +1

Query: 478 KIFSCKDCDKIFNTKSSLKNHRHRNHSTRGVERKKRPRVTVSSFQCPDCTKRFKHKHSLD 657
           K F C+ C      KS L +H  ++HS             V  ++C +CT   K+ HSL 
Sbjct: 15  KPFKCEKCSYSCVNKSMLNSHL-KSHSN------------VYQYRCANCTYATKYCHSLK 61

Query: 658 KH 663
            H
Sbjct: 62  LH 63


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 31.9 bits (69), Expect = 0.015
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +1

Query: 478 KIFSCKDCDKIFNTKSSLKNHRHRNHSTRGVERKKRPRVTVSSFQCPDCTKRFKHKHSLD 657
           K+F+C+ C K+  +K+SLK H    H+ R  E           ++C  C + +  ++SL 
Sbjct: 4   KLFTCQLCGKVLCSKASLKRHVADKHAERQEE-----------YRCVICERVYCSRNSLM 52

Query: 658 KHRDTHLEKTHP 693
            H  T+  K+ P
Sbjct: 53  THIYTY-HKSRP 63


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 31.5 bits (68), Expect = 0.019
 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
 Frame = +1

Query: 478 KIFSCKDCDKIFNTKSSLKNHRHRNHSTRGVERKKRPRVTVSSFQCPDCTKRFKHKHSLD 657
           K FSCK C+K++ +  +LK H  R H+                 +C  C K F     L 
Sbjct: 15  KSFSCKYCEKVYVSLGALKMH-IRTHTL--------------PCKCHLCGKAFSRPWLLQ 59

Query: 658 KHRDTHL-EKTHPCAECPKKF 717
            H  TH  EK   C  C + F
Sbjct: 60  GHIRTHTGEKPFSCQHCNRAF 80



 Score = 23.4 bits (48), Expect = 5.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 679 EKTHPCAECPKKFGSQVLLXMHMKSH 756
           +K+  C  C K + S   L MH+++H
Sbjct: 14  KKSFSCKYCEKVYVSLGALKMHIRTH 39


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 31.1 bits (67), Expect = 0.026
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = +1

Query: 490 CKDCDKIFNTKSSLKNHR---HRNHSTRGVERKK 582
           C  C +++++ +SL+NH+   HR HS    +RK+
Sbjct: 35  CNICKRVYSSLNSLRNHKSIYHRQHSKNEQQRKE 68



 Score = 23.8 bits (49), Expect = 3.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 484 FSCKDCDKIFNTKSSLKNHRHRNHS 558
           F C+ C+KI  + + L+ H    H+
Sbjct: 3   FRCEPCNKILTSLTRLRRHIQNVHT 27


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 30.3 bits (65), Expect = 0.045
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +1

Query: 484 FSCKDCDKIFNTKSSLKNHRHRNHSTRGVERKKRPRVTVSSFQCPDCTKRFKHKHSLDKH 663
           ++C  C K  +TK +LK H+ + H         +P   ++S  C  C K F+  +SL+ H
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQHF--------QP---LNSAVCALCHKVFRTLNSLNNH 420

Query: 664 RDTH 675
           +  +
Sbjct: 421 KSIY 424



 Score = 27.1 bits (57), Expect = 0.42
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 442 IEKMKSEEETKPKIFS-CKDCDKIFNTKSSLKNHRHRNH 555
           +++ K ++  +P   + C  C K+F T +SL NH+   H
Sbjct: 387 LKRHKEQQHFQPLNSAVCALCHKVFRTLNSLNNHKSIYH 425


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 409 RKREMRKEARIIEKMKSEEE 468
           R RE RK+ R  EK+ +EEE
Sbjct: 8   RNREYRKKDRQYEKLCNEEE 27


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 409 RKREMRKEARIIEKMKSEEE 468
           R RE RK+ R  EK+ +EEE
Sbjct: 8   RNREYRKKDRQYEKLCNEEE 27


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 409 RKREMRKEARIIEKMKSEEE 468
           R RE RK+ R  EK+ +EEE
Sbjct: 8   RNREYRKKDRQYEKLCNEEE 27


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 409 RKREMRKEARIIEKMKSEEE 468
           R RE RK+ R  EK+ +EEE
Sbjct: 8   RNREYRKKDRQYEKLCNEEE 27


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related protein
            STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -2

Query: 1288 GGXXXXXXGXXXXXGXXAXGGGGGXG 1211
            GG      G     G    GGGGG G
Sbjct: 28   GGVVTGASGGSIVVGANNGGGGGGLG 53


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 1209 PPXPPPPPXA 1238
            PP PPPPP +
Sbjct: 1355 PPPPPPPPSS 1364


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +2

Query: 1088 PXPXPPXPXXXXXPPXXXPPPXSXXPPP 1171
            P P P        P    PP  S  PPP
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNPSQGPPP 48


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 1209 PPXPPPPPXAXXP 1247
            P  PPPPP +  P
Sbjct: 341  PAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 318,105
Number of Sequences: 438
Number of extensions: 9286
Number of successful extensions: 43
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52395750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)