Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_E06_e429_10.seq
(1516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 255 6e-68
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 254 1e-67
10_02_0199 + 6668902-6669293,6669825-6669882 35 0.15
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 34 0.26
03_05_0366 - 23505755-23506441 31 2.4
11_01_0338 + 2522698-2523213 31 3.2
07_03_1721 - 29023979-29025295 29 7.3
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 255 bits (625), Expect = 6e-68
Identities = 132/272 (48%), Positives = 165/272 (60%), Gaps = 3/272 (1%)
Frame = +2
Query: 158 RPLVSVYSEKSEVVA--GASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQ 331
RPLVSV + + ++ +SL L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 332 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 511
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125
Query: 512 XXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVL 691
ARGH +E +PELPLV+SD + I KT QA+ L+++ A++D
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAE 185
Query: 692 KVYKSQRLRAGKGKMRNRRRVQRKGPPYHL**GQGSDSCIPKHPL-AXXMXXXXXXXXXX 868
K S +R GKGKMRNRR + RKGP + +GS L +
Sbjct: 186 KAKDSVGIRPGKGKMRNRRYINRKGPLI-VYGTEGSKIVKAFRNLPGVDVANVERLNLLD 244
Query: 869 XAPGGHLGRFIXXTSXXFKXLTXLXASWKXPS 964
APGGHLGRF+ T FK L + +++ PS
Sbjct: 245 LAPGGHLGRFVIWTESAFKKLEEVYGTFEAPS 276
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 254 bits (622), Expect = 1e-67
Identities = 132/274 (48%), Positives = 164/274 (59%), Gaps = 2/274 (0%)
Frame = +2
Query: 149 SVARPLVSVYSEKSEVVA-GASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAG 325
+ ARPLVSV + + ++ A + +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 326 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 505
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 506 XXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSD 685
ARGH +E +PE PLVVSD ++ I KT Q++ L++I A++D
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYAD 182
Query: 686 VLKVYKSQRLRAGKGKMRNRRRVQRKGPPYHL**GQGSDSCIPKHPL-AXXMXXXXXXXX 862
K S +RAGKGKMRNRR + RKGP + +GS L +
Sbjct: 183 AEKTKDSVAIRAGKGKMRNRRYINRKGPLI-VYGTEGSKVVKAFRNLPGVDVANVERLNL 241
Query: 863 XXXAPGGHLGRFIXXTSXXFKXLTXLXASWKXPS 964
APGGHLGRF+ T FK L + + P+
Sbjct: 242 LDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPA 275
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 35.1 bits (77), Expect = 0.15
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +2
Query: 278 MSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 448
+++ A ++E G A+SW TGRA A + R R GG R A N G R
Sbjct: 18 LARAAASSVAANREGGG--GAQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 34.3 bits (75), Expect = 0.26
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 444 PPRHMLPNAPCPDLWVPPP 388
PPRH++P P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 2.4
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 224 FVFKAPIRPDLVNDVHVSMSKNAR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 400
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 401 HRSGQGA 421
+ + + A
Sbjct: 168 NDNDEEA 174
>11_01_0338 + 2522698-2523213
Length = 171
Score = 30.7 bits (66), Expect = 3.2
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -2
Query: 375 IRATARPVPQDSALV**PASLLTQ*GWRAFFDIDTWTSLTRSGLMGALNTNGRGSEA 205
+R+ ARP+P+ +AL P+S A I + + R G+M A G EA
Sbjct: 68 VRSAARPIPETAALTLVPSSSAAAMAKSAPVRIPSEAAAARRGVMWAAQAGGEDGEA 124
>07_03_1721 - 29023979-29025295
Length = 438
Score = 29.5 bits (63), Expect = 7.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 471 HGLVGANIRPPRHMLPNAPCPDLWVP-PPRTRGIRATARPV 352
+G+VG + PP H +P P P P P GI A A PV
Sbjct: 227 NGIVGHSGVPPMHPIPCFPGPPFVYPWSPAWNGIPAMAPPV 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,070,831
Number of Sequences: 37544
Number of extensions: 611950
Number of successful extensions: 2132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2127
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4861283252
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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