Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_E06_e429_10.seq
(1516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 258 1e-68
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 31 1.6
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 31 1.6
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 31 2.8
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 30 3.7
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 30 3.7
U41535-6|AAK67248.1| 482|Caenorhabditis elegans Lin-26 related ... 30 4.9
U41535-5|AAK67252.1| 548|Caenorhabditis elegans Lin-26 related ... 30 4.9
AJ130960-1|CAA10264.1| 482|Caenorhabditis elegans LIR-2B protei... 30 4.9
AJ130959-1|CAA10263.1| 548|Caenorhabditis elegans LIR-2A protei... 30 4.9
U41528-3|AAK39170.2| 594|Caenorhabditis elegans Kinesin-like pr... 29 6.5
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 29 8.6
AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical... 29 8.6
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 258 bits (631), Expect = 1e-68
Identities = 131/263 (49%), Positives = 163/263 (61%), Gaps = 1/263 (0%)
Frame = +2
Query: 155 ARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQT 334
ARPLV+VY EK E + + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q
Sbjct: 3 ARPLVTVYDEKYEATQ-SQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61
Query: 335 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 514
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRY 121
Query: 515 XXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLK 694
QARGH+++++ E+PLVVSDKV+ KTK+AV+FLRR W+D+ K
Sbjct: 122 AVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEK 181
Query: 695 VYKSQRLRAGKGKMRNRRRVQRKGPPYHL**GQGSDSCIPKHPL-AXXMXXXXXXXXXXX 871
VY S+R RAGKGK+RNR+ Q+ GP GQ ++ + +
Sbjct: 182 VYNSKRNRAGKGKLRNRQHKQKLGPVVIY--GQDAECARAFRNIPGVDVMNVERLNLLKL 239
Query: 872 APGGHLGRFIXXTSXXFKXLTXL 940
APGGHLGR I T FK L +
Sbjct: 240 APGGHLGRLIIWTESAFKKLDTI 262
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 31.5 bits (68), Expect = 1.6
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 240 GALNTNGRGSEAPATTSLFSEYT-DTKGRATDRLISLYQ 127
G LN NGR S A T F++YT T R TD SL Q
Sbjct: 9 GGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSLSQ 47
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 31.5 bits (68), Expect = 1.6
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 240 GALNTNGRGSEAPATTSLFSEYT-DTKGRATDRLISLYQ 127
G LN NGR S A T F++YT T R TD SL Q
Sbjct: 9 GGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSLSQ 47
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 30.7 bits (66), Expect = 2.8
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +2
Query: 287 NARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 457
N R V K H+ SW T + R GGG R SG G RGGR
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196
Query: 458 PTKP 469
KP
Sbjct: 197 APKP 200
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 30.3 bits (65), Expect = 3.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 252 SGLMGALNTNGRGSEAPATTSLFSEYTDTKGR 157
SG++G N NG GS +P+T++ +Y GR
Sbjct: 14 SGIVGGNNINGEGSSSPSTSAPQVKYRGGTGR 45
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate
adaptor protein CED-6 protein.
Length = 492
Score = 30.3 bits (65), Expect = 3.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 252 SGLMGALNTNGRGSEAPATTSLFSEYTDTKGR 157
SG++G N NG GS +P+T++ +Y GR
Sbjct: 14 SGIVGGNNINGEGSSSPSTSAPQVKYRGGTGR 45
>U41535-6|AAK67248.1| 482|Caenorhabditis elegans Lin-26 related
protein 2, isoform b protein.
Length = 482
Score = 29.9 bits (64), Expect = 4.9
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 134 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVS 277
SE+ +S++ P+ S S+ SE A SLP +AP+ L++D S
Sbjct: 108 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 155
>U41535-5|AAK67252.1| 548|Caenorhabditis elegans Lin-26 related
protein 2, isoform a protein.
Length = 548
Score = 29.9 bits (64), Expect = 4.9
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 134 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVS 277
SE+ +S++ P+ S S+ SE A SLP +AP+ L++D S
Sbjct: 174 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 221
>AJ130960-1|CAA10264.1| 482|Caenorhabditis elegans LIR-2B protein
protein.
Length = 482
Score = 29.9 bits (64), Expect = 4.9
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 134 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVS 277
SE+ +S++ P+ S S+ SE A SLP +AP+ L++D S
Sbjct: 108 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 155
>AJ130959-1|CAA10263.1| 548|Caenorhabditis elegans LIR-2A protein
protein.
Length = 548
Score = 29.9 bits (64), Expect = 4.9
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 134 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVS 277
SE+ +S++ P+ S S+ SE A SLP +AP+ L++D S
Sbjct: 174 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 221
>U41528-3|AAK39170.2| 594|Caenorhabditis elegans Kinesin-like
protein protein 8 protein.
Length = 594
Score = 29.5 bits (63), Expect = 6.5
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +2
Query: 566 RGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNR 745
R + EK+ +L +S + +EIN K+ V RIK D L++ KS+R + +R R
Sbjct: 353 RSDVEEKLDKLKDDISSREREINAQKEEV---NRIK---DSLRLEKSKRNELEEEVLRQR 406
Query: 746 RRVQRK 763
R Q +
Sbjct: 407 RCAQEE 412
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 29.1 bits (62), Expect = 8.6
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = -2
Query: 297 WRAFFDIDT-WTSLTRSGLMGALNTNGRGSEAPATTSLFSEYTDTKGRATD--RLISLYQ 127
++ FFD + W S+ +G++N G G+ + LFS TD +L S+Y
Sbjct: 2319 YQGFFDHNLEWVSIENIQFVGSMNPIGDGAAVSISNRLFSLLRCVSLNTTDSSQLTSIY- 2377
Query: 126 RSYSSKKHYRRWQRPSALVPNXL 58
R+Y + +R S ++ N +
Sbjct: 2378 RTYLTPILEEVGERNSEIIANRM 2400
>AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical
protein Y53F4B.36 protein.
Length = 297
Score = 29.1 bits (62), Expect = 8.6
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +2
Query: 140 MSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVS 313
MS++V P +S VV+ + F++ P ++ D H+ + A CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,959,480
Number of Sequences: 27780
Number of extensions: 408578
Number of successful extensions: 1076
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4348758262
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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