Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E06_e429_10.seq
         (1516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   256   3e-68
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   254   1e-67
At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar...    31   1.5  
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family...    30   4.6  
At2g18470.1 68415.m02151 protein kinase family protein contains ...    29   6.1  
At1g70370.1 68414.m08095 BURP domain-containing protein / polyga...    29   6.1  
At4g08380.1 68417.m01384 proline-rich extensin-like family prote...    29   8.0  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  256 bits (627), Expect = 3e-68
 Identities = 132/278 (47%), Positives = 166/278 (59%), Gaps = 3/278 (1%)
 Frame = +2

Query: 140 MSLSVARPLVSVYSEKSEVVAGAS--LPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVS 313
           M+ + ARPLV++ +   ++    S  + LP V  AP+RPD+VN VH  +S N+RQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 314 KEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXX 493
           K+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH   
Sbjct: 61  KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 120

Query: 494 XXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIK 673
                                  ARGH +E +PE+PLVVSD  + + KT  A+  L++I 
Sbjct: 121 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 180

Query: 674 AWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPPYHL**GQGSDSCIPKHPL-AXXMXXXX 850
           A+ D  K   S  +R GKGKMRNRR + RKGP   +   +GS        L    +    
Sbjct: 181 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLV-VYGTEGSKIVKAFRNLPGVELCHVE 239

Query: 851 XXXXXXXAPGGHLGRFIXXTSXXFKXLTXLXASWKXPS 964
                  APGGHLGRF+  T   F+ L  +  S++ PS
Sbjct: 240 RLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPS 277


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  254 bits (621), Expect = 1e-67
 Identities = 130/276 (47%), Positives = 162/276 (58%), Gaps = 4/276 (1%)
 Frame = +2

Query: 149 SVARPLVSVYSEKSEVVAGAS--LPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEA 322
           + ARPLV+V     ++    S  + LP V  AP+RPD+VN VH  +S N+RQPY VSK+A
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64

Query: 323 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXX 502
           GHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH      
Sbjct: 65  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVN 124

Query: 503 XXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWS 682
                               ARGH +E +PE+PLVVSD  + + KT  A+  L++I A+ 
Sbjct: 125 MKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYD 184

Query: 683 DVLKVYKSQRLRAGKGKMRNRRRVQRKGPPYHL**GQGSDSCIP--KHPLAXXMXXXXXX 856
           D  K   S  +R GKGKMRNRR + RKGP      G      +   ++     +      
Sbjct: 185 DAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVF--GTEGAKIVKAFRNLPGVELCHVERL 242

Query: 857 XXXXXAPGGHLGRFIXXTSXXFKXLTXLXASWKXPS 964
                APGGHLGRF+  T   F+ L  +  S++ PS
Sbjct: 243 NLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPS 278


>At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar to
           gb|U06698 neuronal kinesin heavy chain from Homo sapiens
           and contains a PF|00225 Kinesin motor domain. EST
           gb|AA042507 comes from this gene; identical to cDNA
           MKRP1 mRNA for kinesin-related protein,  GI:16902291,
           kinesin-related protein [Arabidopsis thaliana]
           GI:16902292
          Length = 890

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 270 WTSLTRS-GLMGALNTNGRGSEAPATTSLFSEYTDTK 163
           W  L +S G+ G L T+G  S+A  + S  S+YT TK
Sbjct: 549 WLKLKKSDGVAGTLPTDGNQSQASGSPSSSSKYTQTK 585


>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 340

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 483 CQRLHGLVGANIRPPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSA 337
           CQ+  G V   +  P H +P      L  PPP++  +   + P P  S+
Sbjct: 169 CQQSLGFVAPMMAQPMHQIPTTIVLSLPPPPPQSLSLSLPSPPQPPPSS 217


>At2g18470.1 68415.m02151 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 633

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 589 NLLNNMPSSLNEGRYPGRCHGGGHGSTSLP*VHATVPAPP 470
           N  NN PS  ++G    R +GG +G    P    + P+PP
Sbjct: 66  NSSNNSPSPPSQGGGGERGNGGNNGGNDTPPSRGSPPSPP 105


>At1g70370.1 68414.m08095 BURP domain-containing protein /
           polygalacturonase, putative similar to polygalacturonase
           isoenzyme 1 beta subunit [Lycopersicon esculentum]
           GI:170480; contains Pfam profile PF03181: BURP domain
          Length = 626

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -2

Query: 276 DTWTSLTRSGLMGALNTNGRGSEAPATTSLFSEYTDTKGRATDRLISLYQRSYSSKK 106
           DT+TS    G +   N N  G+   A    F+ Y D K    D   S Y +  +S+K
Sbjct: 278 DTFTSYGSDGNVPQNNFNNYGASGNAAVDTFANYRD-KANVGDDSFSSYAKDSNSEK 333


>At4g08380.1 68417.m01384 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 437

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 444 PPRHMLPNAPCPDLWVPPP 388
           PP    P  PCPD++ PPP
Sbjct: 385 PPYAYSPPPPCPDVYKPPP 403


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,179,317
Number of Sequences: 28952
Number of extensions: 395016
Number of successful extensions: 1142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4048208640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)