Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E05_e421_09.seq
         (1550 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   6.1  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   6.1  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   6.1  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   8.0  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   8.0  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    23   8.0  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   8.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   8.0  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 92  SCYNCNKTGHIARNCPEGGRDN-SNQTCYNCNKSGHISR 205
           SC   N +  ++ NC   GR N +N+      K  H ++
Sbjct: 238 SCLGSNTSSMLSLNCLNTGRTNFTNKQLTELEKEFHFNK 276


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 92  SCYNCNKTGHIARNCPEGGRDN-SNQTCYNCNKSGHISR 205
           SC   N +  ++ NC   GR N +N+      K  H ++
Sbjct: 27  SCLGSNTSSMLSLNCLNTGRTNFTNKQLTELEKEFHFNK 65


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 92  SCYNCNKTGHIARNCPEGGRDN-SNQTCYNCNKSGHISR 205
           SC   N +  ++ NC   GR N +N+      K  H ++
Sbjct: 27  SCLGSNTSSMLSLNCLNTGRTNFTNKQLTELEKEFHFNK 65


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 310 LRVVGRVLIPLLVAVARDM 254
           L V+G V++P+++   +DM
Sbjct: 81  LGVIGNVMVPIVIFKTKDM 99


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 310 LRVVGRVLIPLLVAVARDM 254
           L V+G V++P+++   +DM
Sbjct: 81  LGVIGNVMVPIVIFKTKDM 99


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 494 PFSHSASVLLFHSFCKFF 441
           PF+ S  VL F+  C F+
Sbjct: 274 PFTQSPGVLGFNEICSFY 291


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 150 RPPSGQFRAMCPVLLQL*HDGSSGPRAEXPAAR 52
           RPPS       PV   +   G+ GP ++ PA++
Sbjct: 73  RPPSSSLSYGGPVNDDVRSPGTPGPLSQAPASQ 105


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 150 RPPSGQFRAMCPVLLQL*HDGSSGPRAEXPAAR 52
           RPPS       PV   +   G+ GP ++ PA++
Sbjct: 229 RPPSSSLSYGGPVNDDVRSPGTPGPLSQAPASQ 261


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,299
Number of Sequences: 336
Number of extensions: 4759
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 46705800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)