Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_E05_e421_09.seq
(1550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 75 2e-14
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 50 9e-07
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 49 2e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 46 1e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.080
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.080
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 31 0.57
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 27 5.3
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 27 7.0
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 27 9.2
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 27 9.2
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 75.4 bits (177), Expect = 2e-14
Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +2
Query: 89 PSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHIS 262
P CYNC + GH AR C +G CYNCN++GH + C P KTCY CG GH+
Sbjct: 17 PRCYNCGENGHQARECTKGS------ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV 70
Query: 263 RDCDEERN 286
RDC N
Sbjct: 71 RDCPSSPN 78
Score = 66.5 bits (155), Expect = 9e-12
Identities = 32/69 (46%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Frame = +2
Query: 95 CYNCNKTGHIARNC-----PEGGR---DNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKP 250
CY C + GHIAR+C GGR SN CY C GH +R+C G K CY CGK
Sbjct: 85 CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK-CYSCGKI 143
Query: 251 GHISRDCDE 277
GH S +C +
Sbjct: 144 GHRSFECQQ 152
Score = 61.3 bits (142), Expect = 3e-10
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Frame = +2
Query: 86 EPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC-PDGTKT----------- 229
E +CY C GH+ R+CP CY C + GHI+R+C +G ++
Sbjct: 57 EKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNM 116
Query: 230 -CYVCGKPGHISRDC 271
CY CG GH +RDC
Sbjct: 117 NCYACGSYGHQARDC 131
Score = 55.2 bits (127), Expect = 2e-08
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +2
Query: 92 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 265
+CY C GH AR+C G + CY+C K GH S C + + CY C +PGHI+
Sbjct: 117 NCYACGSYGHQARDCTMGVK------CYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAV 170
Query: 266 DC 271
+C
Sbjct: 171 NC 172
Score = 30.7 bits (66), Expect = 0.57
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 83 DEPSCYNCNKTGHIARNC 136
D CY CN+ GHIA NC
Sbjct: 155 DGQLCYKCNQPGHIAVNC 172
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 50.0 bits (114), Expect = 9e-07
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNK-SGHISRNCPDGTKTCYVCGKPGHISRDC 271
C+NC GHI+++CP + C C HIS CP TK C CG GHI+ C
Sbjct: 89 CHNCKGNGHISKDCP-------HVLCTTCGAIDDHISVRCP-WTKKCMNCGLLGHIAARC 140
Query: 272 DEER 283
E R
Sbjct: 141 SEPR 144
Score = 40.7 bits (91), Expect = 5e-04
Identities = 19/49 (38%), Positives = 21/49 (42%)
Frame = +2
Query: 68 SARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 214
S R P C NC GHIA C E R + C C+ H S CP
Sbjct: 118 SVRCPWTKKCMNCGLLGHIAARCSE-PRKRGPRVCRTCHTDTHTSSTCP 165
Score = 35.9 bits (79), Expect = 0.015
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 146 GRDNSNQ-TCYNCNKSGHISRNCPDGTKTCYVCGK-PGHISRDC 271
G D S C+NC +GHIS++CP C CG HIS C
Sbjct: 80 GSDPSESIVCHNCKGNGHISKDCPH--VLCTTCGAIDDHISVRC 121
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC----PDGTKTCYVCGKPGHIS 262
C+ C + GHI ++CPE +DN + C+ C H C P C++C + GH+S
Sbjct: 79 CFACRQQGHIVQDCPE-AKDNVS-ICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLS 136
Query: 263 RDCDE 277
C++
Sbjct: 137 GQCEQ 141
Score = 37.5 bits (83), Expect = 0.005
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 155 NSNQTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRDCDEE 280
N ++ C+ C + GHI ++CP D C+ CG H C ++
Sbjct: 74 NRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKK 118
Score = 28.3 bits (60), Expect = 3.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 224 KTCYVCGKPGHISRDCDEERN 286
K C+ C + GHI +DC E ++
Sbjct: 77 KFCFACRQQGHIVQDCPEAKD 97
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 46.4 bits (105), Expect = 1e-05
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +2
Query: 74 RGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 214
R + C NC GH +CPE N C +C GHI+R+CP
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +2
Query: 149 RDNSNQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDC 271
RD+ NQ C NC GH +CP+ C CG GHI+RDC
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC 349
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 125 ARNCPEGGRD-NSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCDEERN*HAPN 301
A + PEG D NQ +G + D + C CG GH DC E N H N
Sbjct: 278 AASVPEGQNDLKRNQLRQLATLNGTLR---DDENQVCQNCGNVGHRRFDCPERIN-HTMN 333
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 33.5 bits (73), Expect = 0.080
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 194 HISRNCPDGTKTCYVCGKPGHISRDC 271
H + CP TCY CGK H R+C
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 33.5 bits (73), Expect = 0.080
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 194 HISRNCPDGTKTCYVCGKPGHISRDC 271
H + CP TCY CGK H R+C
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 30.7 bits (66), Expect = 0.57
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 65 NSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCN-KSGHISRNCPDGTKTCYVC 241
N + ++P+ N + N N TC NC ++ + R PDG C C
Sbjct: 600 NINKNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNAC 659
Query: 242 G 244
G
Sbjct: 660 G 660
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 774 LTKKSVQNILKYILCNAKTVTLPSPSIVQSR 682
L +KS+ NI Y++ + + LP P+I++ R
Sbjct: 553 LDRKSISNICCYMMDASTHIDLPPPAIIKPR 583
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +2
Query: 41 VXXPRAAGNSARGPDEPSCYNCNKTGHIARNCPEGGR-DNSNQTCYNCNKSGHISRNCPD 217
V P+ +G + SC +CN +G G TC +CN +G R+ D
Sbjct: 135 VICPKCSGRGGKEGSVKSCASCNGSGVKFITRAMGPMIQRMQMTCPDCNGAGETIRD-ED 193
Query: 218 GTKTC 232
K C
Sbjct: 194 RCKEC 198
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 26.6 bits (56), Expect = 9.2
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 662 MI*KHNNSFTSCKNKHINVVVSAPTRSYTIQHIITDSTVASSGASVC-HNMSRVAWIPFS 486
+I K N FT+ KN INV+ S ++ I + + C N+ +A +
Sbjct: 628 LIIKSNEKFTAAKNSLINVIKSGFEQNEFINPYFLQTNYLKNLLCCCITNLVSLAILSKD 687
Query: 485 HSASV 471
HSA++
Sbjct: 688 HSANL 692
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 74 RGPDEPSCYNCNKTGHIARN--CPEGGR 151
R P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,068,055
Number of Sequences: 5004
Number of extensions: 70220
Number of successful extensions: 213
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 872156560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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