Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_E05_e421_09.seq
(1550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 75 2e-13
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 62 1e-09
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 62 1e-09
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 62 1e-09
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 56 2e-09
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 56 2e-09
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 56 2e-09
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 58 2e-08
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 49 1e-05
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 49 1e-05
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 44 3e-04
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 44 3e-04
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 44 3e-04
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 44 3e-04
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 42 9e-04
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 42 9e-04
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 42 9e-04
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 42 0.002
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 42 0.002
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 42 0.002
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 39 0.008
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 38 0.014
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 38 0.014
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 33 0.54
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 31 1.7
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 31 2.2
L12018-4|AAK68342.1| 456|Caenorhabditis elegans Dnaj domain (pr... 31 2.9
L12018-3|AAK68343.1| 446|Caenorhabditis elegans Dnaj domain (pr... 31 2.9
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 31 2.9
AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical ... 30 5.1
Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical pr... 29 6.7
AC084159-15|AAK39353.1| 418|Caenorhabditis elegans Hypothetical... 29 6.7
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 29 8.9
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 74.5 bits (175), Expect = 2e-13
Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 18/83 (21%)
Frame = +2
Query: 92 SCYNCNKTGHIARNCPEGGRDNSNQ------TCYNCNKSGHISRNCPDGTK--------- 226
+CY C + GHI+RNCP G D + TCYNC ++GH SR+CP G
Sbjct: 5 NCYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRGGGG 64
Query: 227 ---TCYVCGKPGHISRDCDEERN 286
+CY CG GH SRDC R+
Sbjct: 65 GGGSCYNCGGRGHYSRDCPSARS 87
Score = 74.1 bits (174), Expect = 2e-13
Identities = 40/94 (42%), Positives = 46/94 (48%), Gaps = 19/94 (20%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCP----EGG-----------RDNSNQTCYNCNKSGH 196
G G SCYNC GH +R+CP EGG R Q CYNC +SGH
Sbjct: 58 GQRGGGGGGGSCYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGH 117
Query: 197 ISRNCPDG----TKTCYVCGKPGHISRDCDEERN 286
ISR C + K CY C + GHISRDC + N
Sbjct: 118 ISRECTESGSAEEKRCYQCQETGHISRDCPSQTN 151
Score = 68.5 bits (160), Expect = 1e-11
Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 27/99 (27%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPD- 217
G G +CYNC +TGH +R+CP+GG + +CYNC GH SR+CP
Sbjct: 26 GGRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSA 85
Query: 218 -------------------GTKTCYVCGKPGHISRDCDE 277
G + CY CG+ GHISR+C E
Sbjct: 86 RSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHISRECTE 124
Score = 51.6 bits (118), Expect = 1e-06
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 11/49 (22%)
Frame = +2
Query: 158 SNQTCYNCNKSGHISRNCPDGT-----------KTCYVCGKPGHISRDC 271
S++ CY C + GHISRNCP+G TCY C + GH SRDC
Sbjct: 2 SDRNCYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDC 50
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 61.7 bits (143), Expect = 1e-09
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
G RG +C+NC + GH + +CPE ++ + CYNC + GH SR+CP+ K
Sbjct: 248 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 61.7 bits (143), Expect = 1e-09
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
G RG +C+NC + GH + +CPE ++ + CYNC + GH SR+CP+ K
Sbjct: 362 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 57.6 bits (133), Expect = 2e-08
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Frame = +2
Query: 143 GGRDNS--NQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 283
GG+D N C+NC + GH S +CP+ K CY C +PGH SRDC EER
Sbjct: 248 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 57.6 bits (133), Expect = 2e-08
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Frame = +2
Query: 143 GGRDNS--NQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 283
GG+D N C+NC + GH S +CP+ K CY C +PGH SRDC EER
Sbjct: 362 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 47.6 bits (108), Expect = 2e-05
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = +2
Query: 65 NSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
N RGP + C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 447 NEERGPMK--CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 493
Score = 46.0 bits (104), Expect = 7e-05
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 170 CYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 271
C+NC GH S CP+ + C+ CG+ GH S +C
Sbjct: 455 CFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 36.7 bits (81), Expect = 0.044
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPE------------GGRDNSNQTCYNCNKSGHISRNCPDGTKTCYV 238
CYNC + GH +R+CPE G N + + N G C+
Sbjct: 398 CYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFN 457
Query: 239 CGKPGHISRDCDE 277
C GH S +C E
Sbjct: 458 CKGEGHRSAECPE 470
Score = 34.3 bits (75), Expect = 0.24
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSG 193
CYNC + GH +R+CPE + + + SG
Sbjct: 284 CYNCQQPGHNSRDCPEERKPREGRNGFTGGSSG 316
Score = 29.1 bits (62), Expect = 8.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 188 SGHISRNCPDGTKTCYVCGKPGHISRDCDEERN*HAP 298
SG ++ + C+ C +PGH S DC E + P
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 281
Score = 29.1 bits (62), Expect = 8.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 188 SGHISRNCPDGTKTCYVCGKPGHISRDCDEERN*HAP 298
SG ++ + C+ C +PGH S DC E + P
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 395
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 61.7 bits (143), Expect = 1e-09
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
G RG +C+NC + GH + +CPE ++ + CYNC + GH SR+CP+ K
Sbjct: 248 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 61.7 bits (143), Expect = 1e-09
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
G RG +C+NC + GH + +CPE ++ + CYNC + GH SR+CP+ K
Sbjct: 362 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 57.6 bits (133), Expect = 2e-08
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Frame = +2
Query: 143 GGRDNS--NQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 283
GG+D N C+NC + GH S +CP+ K CY C +PGH SRDC EER
Sbjct: 248 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 57.6 bits (133), Expect = 2e-08
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Frame = +2
Query: 143 GGRDNS--NQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 283
GG+D N C+NC + GH S +CP+ K CY C +PGH SRDC EER
Sbjct: 362 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 47.6 bits (108), Expect = 2e-05
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = +2
Query: 65 NSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
N RGP + C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 447 NEERGPMK--CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 493
Score = 46.0 bits (104), Expect = 7e-05
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 170 CYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 271
C+NC GH S CP+ + C+ CG+ GH S +C
Sbjct: 455 CFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 36.7 bits (81), Expect = 0.044
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPE------------GGRDNSNQTCYNCNKSGHISRNCPDGTKTCYV 238
CYNC + GH +R+CPE G N + + N G C+
Sbjct: 398 CYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFN 457
Query: 239 CGKPGHISRDCDE 277
C GH S +C E
Sbjct: 458 CKGEGHRSAECPE 470
Score = 34.3 bits (75), Expect = 0.24
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSG 193
CYNC + GH +R+CPE + + + SG
Sbjct: 284 CYNCQQPGHNSRDCPEERKPREGRNGFTGGSSG 316
Score = 29.1 bits (62), Expect = 8.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 188 SGHISRNCPDGTKTCYVCGKPGHISRDCDEERN*HAP 298
SG ++ + C+ C +PGH S DC E + P
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 281
Score = 29.1 bits (62), Expect = 8.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 188 SGHISRNCPDGTKTCYVCGKPGHISRDCDEERN*HAP 298
SG ++ + C+ C +PGH S DC E + P
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 395
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 61.7 bits (143), Expect = 1e-09
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
G RG +C+NC + GH + +CPE ++ + CYNC + GH SR+CP+ K
Sbjct: 248 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 61.7 bits (143), Expect = 1e-09
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
G RG +C+NC + GH + +CPE ++ + CYNC + GH SR+CP+ K
Sbjct: 362 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 57.6 bits (133), Expect = 2e-08
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Frame = +2
Query: 143 GGRDNS--NQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 283
GG+D N C+NC + GH S +CP+ K CY C +PGH SRDC EER
Sbjct: 248 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 57.6 bits (133), Expect = 2e-08
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Frame = +2
Query: 143 GGRDNS--NQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 283
GG+D N C+NC + GH S +CP+ K CY C +PGH SRDC EER
Sbjct: 362 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 47.6 bits (108), Expect = 2e-05
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = +2
Query: 65 NSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
N RGP + C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 447 NEERGPMK--CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 493
Score = 46.0 bits (104), Expect = 7e-05
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 170 CYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 271
C+NC GH S CP+ + C+ CG+ GH S +C
Sbjct: 455 CFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 36.7 bits (81), Expect = 0.044
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPE------------GGRDNSNQTCYNCNKSGHISRNCPDGTKTCYV 238
CYNC + GH +R+CPE G N + + N G C+
Sbjct: 398 CYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFN 457
Query: 239 CGKPGHISRDCDE 277
C GH S +C E
Sbjct: 458 CKGEGHRSAECPE 470
Score = 34.3 bits (75), Expect = 0.24
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSG 193
CYNC + GH +R+CPE + + + SG
Sbjct: 284 CYNCQQPGHNSRDCPEERKPREGRNGFTGGSSG 316
Score = 29.1 bits (62), Expect = 8.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 188 SGHISRNCPDGTKTCYVCGKPGHISRDCDEERN*HAP 298
SG ++ + C+ C +PGH S DC E + P
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 281
Score = 29.1 bits (62), Expect = 8.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 188 SGHISRNCPDGTKTCYVCGKPGHISRDCDEERN*HAP 298
SG ++ + C+ C +PGH S DC E + P
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 395
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 56.0 bits (129), Expect = 7e-08
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
G G +C+NC + GH + +CPE ++ + CYNC + GH SR C + K
Sbjct: 149 GGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 55.6 bits (128), Expect = 9e-08
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Frame = +2
Query: 143 GGRDNSNQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 283
GG N+N C+NC + GH S +CP+ K CY C +PGH SR+C EER
Sbjct: 153 GGERNNN--CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 50.4 bits (115), Expect(2) = 2e-09
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 143 GGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 271
GG + C+NC GH S CP+ + C+ CG+ GH S +C
Sbjct: 235 GGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 47.6 bits (108), Expect = 2e-05
Identities = 22/55 (40%), Positives = 28/55 (50%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
G RGP + C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 235 GGEERGPMK--CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 282
Score = 30.7 bits (66), Expect(2) = 2e-09
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQT 169
CYNC + GH +R C E + +T
Sbjct: 185 CYNCQQPGHTSRECTEERKPREGRT 209
Score = 29.5 bits (63), Expect = 6.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 230 CYVCGKPGHISRDCDEERN*HAP 298
C+ C +PGH S DC E R P
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREP 182
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 56.0 bits (129), Expect = 7e-08
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
G G +C+NC + GH + +CPE ++ + CYNC + GH SR C + K
Sbjct: 149 GGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 55.6 bits (128), Expect = 9e-08
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Frame = +2
Query: 143 GGRDNSNQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 283
GG N+N C+NC + GH S +CP+ K CY C +PGH SR+C EER
Sbjct: 153 GGERNNN--CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 50.4 bits (115), Expect(2) = 2e-09
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 143 GGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 271
GG + C+NC GH S CP+ + C+ CG+ GH S +C
Sbjct: 235 GGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 47.6 bits (108), Expect = 2e-05
Identities = 22/55 (40%), Positives = 28/55 (50%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
G RGP + C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 235 GGEERGPMK--CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 282
Score = 30.7 bits (66), Expect(2) = 2e-09
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQT 169
CYNC + GH +R C E + +T
Sbjct: 185 CYNCQQPGHTSRECTEERKPREGRT 209
Score = 29.5 bits (63), Expect = 6.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 230 CYVCGKPGHISRDCDEERN*HAP 298
C+ C +PGH S DC E R P
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREP 182
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 56.0 bits (129), Expect = 7e-08
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
G G +C+NC + GH + +CPE ++ + CYNC + GH SR C + K
Sbjct: 149 GGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 55.6 bits (128), Expect = 9e-08
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Frame = +2
Query: 143 GGRDNSNQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRDCDEER 283
GG N+N C+NC + GH S +CP+ K CY C +PGH SR+C EER
Sbjct: 153 GGERNNN--CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 50.4 bits (115), Expect(2) = 2e-09
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 143 GGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 271
GG + C+NC GH S CP+ + C+ CG+ GH S +C
Sbjct: 235 GGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 47.6 bits (108), Expect = 2e-05
Identities = 22/55 (40%), Positives = 28/55 (50%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
G RGP + C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 235 GGEERGPMK--CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 282
Score = 30.7 bits (66), Expect(2) = 2e-09
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQT 169
CYNC + GH +R C E + +T
Sbjct: 185 CYNCQQPGHTSRECTEERKPREGRT 209
Score = 29.5 bits (63), Expect = 6.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 230 CYVCGKPGHISRDCDEERN*HAP 298
C+ C +PGH S DC E R P
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREP 182
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 58.0 bits (134), Expect = 2e-08
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Frame = +2
Query: 92 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC-PDGTK-----TCYVCGKPG 253
+C++C + GH +CP+ +S+ C+ C H C G K TC+VC + G
Sbjct: 230 ACFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVG 289
Query: 254 HISRDCDEERN 286
HISRDC + N
Sbjct: 290 HISRDCHQNVN 300
Score = 49.2 bits (112), Expect = 8e-06
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGG-RDNSNQTCYNCNKSGHISRNC--------PDGTKTCYVCGK 247
C+ C H C + G + TC+ C + GHISR+C PDG C VCG
Sbjct: 256 CFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVGHISRDCHQNVNGVYPDG-GCCNVCGA 314
Query: 248 PGHISRDCDE 277
H+ RDC E
Sbjct: 315 NTHLRRDCPE 324
Score = 29.9 bits (64), Expect = 5.1
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +2
Query: 158 SNQTCYNCNKSGHISRNCPDGTKT-----CYVCGKPGHISRDCDEE 280
+ C++C + GH +CP + C+ CG H +C ++
Sbjct: 227 TGSACFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKK 272
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 48.8 bits (111), Expect = 1e-05
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPD---GTKTC 232
GN G C+NC + GHI++ C + C NC + GH + +C C
Sbjct: 561 GNWDGGERPRGCHNCGEEGHISKECDK--PKVPRFPCRNCEQLGHFASDCDQPRVPRGPC 618
Query: 233 YVCGKPGHISRDCDEER 283
CG GH + DCD+ +
Sbjct: 619 RNCGIEGHFAVDCDQPK 635
Score = 48.4 bits (110), Expect = 1e-05
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKT----CYVCGKPGHIS 262
C NC + GH A +C + C NC GH + +C D K C CG+ GH +
Sbjct: 595 CRNCEQLGHFASDCDQPRVPRG--PCRNCGIEGHFAVDC-DQPKVPRGPCRNCGQEGHFA 651
Query: 263 RDCDEER 283
+DC ER
Sbjct: 652 KDCQNER 658
Score = 37.9 bits (84), Expect = 0.019
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 74 RGPDEPSCYNCNKTGHIARNCP-EGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
RGP C NC + GH A++C E R + C C + GH CP K
Sbjct: 638 RGP----CRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRPK 685
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 48.8 bits (111), Expect = 1e-05
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPD---GTKTC 232
GN G C+NC + GHI++ C + C NC + GH + +C C
Sbjct: 561 GNWDGGERPRGCHNCGEEGHISKECDK--PKVPRFPCRNCEQLGHFASDCDQPRVPRGPC 618
Query: 233 YVCGKPGHISRDCDEER 283
CG GH + DCD+ +
Sbjct: 619 RNCGIEGHFAVDCDQPK 635
Score = 48.4 bits (110), Expect = 1e-05
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKT----CYVCGKPGHIS 262
C NC + GH A +C + C NC GH + +C D K C CG+ GH +
Sbjct: 595 CRNCEQLGHFASDCDQPRVPRG--PCRNCGIEGHFAVDC-DQPKVPRGPCRNCGQEGHFA 651
Query: 263 RDCDEER 283
+DC ER
Sbjct: 652 KDCQNER 658
Score = 37.9 bits (84), Expect = 0.019
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 74 RGPDEPSCYNCNKTGHIARNCP-EGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
RGP C NC + GH A++C E R + C C + GH CP K
Sbjct: 638 RGP----CRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRPK 685
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 44.0 bits (99), Expect = 3e-04
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +2
Query: 137 PEGGRDNSNQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRDCDEERN*HAP 298
P G + + C+ C K + H +++CP+ K CY CG H+S C E R H P
Sbjct: 102 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 159
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 44.0 bits (99), Expect = 3e-04
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +2
Query: 137 PEGGRDNSNQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRDCDEERN*HAP 298
P G + + C+ C K + H +++CP+ K CY CG H+S C E R H P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 44.0 bits (99), Expect = 3e-04
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +2
Query: 137 PEGGRDNSNQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRDCDEERN*HAP 298
P G + + C+ C K + H +++CP+ K CY CG H+S C E R H P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 44.0 bits (99), Expect = 3e-04
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +2
Query: 137 PEGGRDNSNQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRDCDEERN*HAP 298
P G + + C+ C K + H +++CP+ K CY CG H+S C E R H P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 42.3 bits (95), Expect = 9e-04
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSG-HISRNCPDGTKTCYVCGKPGHISRDC 271
C +C + G C + +DN++Q C C +SG H++ + C+ C + GHI+ +C
Sbjct: 631 CSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNC 690
Query: 272 DEE 280
++
Sbjct: 691 PKK 693
Score = 33.9 bits (74), Expect = 0.31
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 92 SCYNCNKTGHIARNCPEGGRDNSNQ 166
+C+ CN+ GHIA NCP+ + S +
Sbjct: 676 ACFRCNEMGHIAWNCPKKNENTSEK 700
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 42.3 bits (95), Expect = 9e-04
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSG-HISRNCPDGTKTCYVCGKPGHISRDC 271
C +C + G C + +DN++Q C C +SG H++ + C+ C + GHI+ +C
Sbjct: 534 CSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNC 593
Query: 272 DEE 280
++
Sbjct: 594 PKK 596
Score = 33.9 bits (74), Expect = 0.31
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 92 SCYNCNKTGHIARNCPEGGRDNSNQ 166
+C+ CN+ GHIA NCP+ + S +
Sbjct: 579 ACFRCNEMGHIAWNCPKKNENTSEK 603
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 42.3 bits (95), Expect = 9e-04
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSG-HISRNCPDGTKTCYVCGKPGHISRDC 271
C +C + G C + +DN++Q C C +SG H++ + C+ C + GHI+ +C
Sbjct: 545 CSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNC 604
Query: 272 DEE 280
++
Sbjct: 605 PKK 607
Score = 33.9 bits (74), Expect = 0.31
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 92 SCYNCNKTGHIARNCPEGGRDNSNQ 166
+C+ CN+ GHIA NCP+ + S +
Sbjct: 590 ACFRCNEMGHIAWNCPKKNENTSEK 614
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 41.5 bits (93), Expect = 0.002
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 92 SCYNCNKTGHIARNCPE-GGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRD 268
+C+NC++ GH A CP G+ NQ ++ I TCY CG+ GH +
Sbjct: 205 TCHNCHERGHKATTCPHLPGQTRQNQDHHHRVDLSLIPDKKNLSDVTCYKCGEKGHYANR 264
Query: 269 C 271
C
Sbjct: 265 C 265
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 41.5 bits (93), Expect = 0.002
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 161 NQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 271
+ TC+NC K GH + C + C CG P H + +C
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANEC 237
Score = 33.9 bits (74), Expect = 0.31
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 92 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
+C+NC K GH A C R+ C NC H + C +K
Sbjct: 203 TCFNCKKYGHRATECSAPQRE-----CANCGDPNHRANECASWSK 242
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 41.5 bits (93), Expect = 0.002
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 161 NQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 271
+ TC+NC K GH + C + C CG P H + +C
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANEC 237
Score = 33.9 bits (74), Expect = 0.31
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 92 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTK 226
+C+NC K GH A C R+ C NC H + C +K
Sbjct: 203 TCFNCKKYGHRATECSAPQRE-----CANCGDPNHRANECASWSK 242
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 39.1 bits (87), Expect = 0.008
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 158 SNQTCYNCNKSGHISRNCPDG 220
S++ CY C + GHISRNCP+G
Sbjct: 2 SDRNCYKCQQPGHISRNCPNG 22
Score = 37.1 bits (82), Expect = 0.033
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 92 SCYNCNKTGHIARNCPEGGRDNSNQ 166
+CY C + GHI+RNCP G D +
Sbjct: 5 NCYKCQQPGHISRNCPNGESDGGRR 29
Score = 31.5 bits (68), Expect = 1.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 224 KTCYVCGKPGHISRDC 271
+ CY C +PGHISR+C
Sbjct: 4 RNCYKCQQPGHISRNC 19
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 38.3 bits (85), Expect = 0.014
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 211
C NC H + CP+ + C NC GHIS++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
Score = 37.5 bits (83), Expect = 0.025
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +2
Query: 170 CYNCNKSGHISRNCPDGTKT-----CYVCGKPGHISRDCDEERN*HA 295
C NC H S CPD C CG GHIS+DC + +A
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKGMYA 476
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 38.3 bits (85), Expect = 0.014
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 211
C NC H + CP+ + C NC GHIS++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
Score = 37.5 bits (83), Expect = 0.025
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +2
Query: 170 CYNCNKSGHISRNCPDGTKT-----CYVCGKPGHISRDCDEERN*HA 295
C NC H S CPD C CG GHIS+DC + +A
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKGMYA 476
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 33.1 bits (72), Expect = 0.54
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Frame = +2
Query: 65 NSARGPDEPSCYNCNKTGHIARNCPEGG---------RDNSNQTCYNCNKSGHISRNCPD 217
N P + C+ C++ GH +CP+ NS + Y N SG +N +
Sbjct: 1347 NQGSAPTDRQCHQCHRIGHFVESCPQRALAKEARKRFGSNSTNSSYRSNDSGRGFKNGEE 1406
Query: 218 G 220
G
Sbjct: 1407 G 1407
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 31.5 bits (68), Expect = 1.7
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +2
Query: 89 PSCYNCNKTGHIARNCPEGGRDN 157
P CY C GH++++CP+ ++
Sbjct: 311 PYCYKCKVVGHVSKDCPQSSTNS 333
Score = 29.1 bits (62), Expect = 8.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 170 CYNCNKSGHISRNCPDGT 223
CY C GH+S++CP +
Sbjct: 313 CYKCKVVGHVSKDCPQSS 330
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 31.1 bits (67), Expect = 2.2
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +2
Query: 38 LVXXPRAAGNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 214
++ PR G+ P + +K R GR C++C + GHISR CP
Sbjct: 128 IMGSPRR-GSFRSSPRSDGMGSSSKRPRSGRRTGRRGRGGPGH-CFHCQEHGHISRMCP 184
Score = 29.9 bits (64), Expect = 5.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 53 RAAGNSARGPDEPSCYNCNKTGHIARNCPE 142
R G RG C++C + GHI+R CP+
Sbjct: 157 RRTGRRGRG-GPGHCFHCQEHGHISRMCPK 185
>L12018-4|AAK68342.1| 456|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 10, isoform a
protein.
Length = 456
Score = 30.7 bits (66), Expect = 2.9
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 77 GPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRN 208
G + SC CN TG +++ +GG TC C SGH ++N
Sbjct: 202 GHKKTSCPYCNGTGAVSQRL-QGGFFYQT-TCNRCRGSGHYNKN 243
>L12018-3|AAK68343.1| 446|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 10, isoform b
protein.
Length = 446
Score = 30.7 bits (66), Expect = 2.9
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 77 GPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRN 208
G + SC CN TG +++ +GG TC C SGH ++N
Sbjct: 202 GHKKTSCPYCNGTGAVSQRL-QGGFFYQT-TCNRCRGSGHYNKN 243
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 30.7 bits (66), Expect = 2.9
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +2
Query: 80 PDEPSCYNCNKTGHIARNC---PEGG-RDNSNQTCYNCNKSGHISRNCP 214
P+ C C + G +C P+ R+ C+ C + GHIS CP
Sbjct: 576 PENGICAECKQVGGHEPSCSLAPKTWKRERPPPQCFTCGEMGHISTYCP 624
>AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical
protein Y48G1BM.5 protein.
Length = 994
Score = 29.9 bits (64), Expect = 5.1
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +2
Query: 134 CPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCDEERN*HAPNNS*Y 313
CP +D+ QTC + + R C + + C +C P HI+ +C ++ NS
Sbjct: 925 CPPCKKDHPLQTC--TMGAIEVKRFCINNGR-CTICSSPSHITGNCSYAQSMQDNTNS-- 979
Query: 314 FIINKNKQNN 343
I + +QN+
Sbjct: 980 -RIQRQRQNH 988
>Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical
protein F28F8.7 protein.
Length = 464
Score = 29.5 bits (63), Expect = 6.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 170 CYNCNKSGHISRNCPDGTKTCYVC 241
C NCNK+ PD TK C +C
Sbjct: 302 CQNCNKALKYYDPIPDDTKLCLIC 325
>AC084159-15|AAK39353.1| 418|Caenorhabditis elegans Hypothetical
protein Y73B3A.13 protein.
Length = 418
Score = 29.5 bits (63), Expect = 6.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 170 CYNCNKSGHISRNCPDGTKTCYVC 241
C NCNK+ PD TK C +C
Sbjct: 281 CQNCNKALKYYDPIPDDTKLCLIC 304
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 29.1 bits (62), Expect = 8.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 230 CYVCGKPGHISRDCDEERN*HAPN 301
CY CGK GH + +C +++ + N
Sbjct: 411 CYYCGKRGHTANECRRKKSDESQN 434
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,411,603
Number of Sequences: 27780
Number of extensions: 436875
Number of successful extensions: 1355
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4473305038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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