Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E05_e421_09.seq
         (1550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              24   4.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   5.4  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = +2

Query: 89  PSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNK 187
           P C  C    H  + CP+G ++       N  K
Sbjct: 76  PICGACGDIAHTVKYCPKGTKNPGTLATVNAFK 108



 Score = 22.6 bits (46), Expect = 9.4
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 170 CYNCNKSGHISRNCPDGTK 226
           C  C    H  + CP GTK
Sbjct: 78  CGACGDIAHTVKYCPKGTK 96


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 380 LSSVRGIIIYIVNCFVY 330
           +S V+ I IY+V CFV+
Sbjct: 298 ISYVKAIDIYLVMCFVF 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 292,369
Number of Sequences: 438
Number of extensions: 5779
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54429375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)