Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_E05_e421_09.seq
(1550 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 71 3e-12
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 68 1e-11
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 66 8e-11
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 60 5e-09
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 56 8e-08
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 53 6e-07
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 52 8e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 52 8e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 50 3e-06
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 50 3e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 50 3e-06
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 49 7e-06
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 49 1e-05
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 48 1e-05
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 46 5e-05
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 46 9e-05
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 39 0.008
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 36 0.054
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 36 0.054
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 36 0.072
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 35 0.17
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 35 0.17
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 34 0.29
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 34 0.29
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 33 0.51
At3g31950.1 68416.m04046 hypothetical protein 33 0.51
At5g51300.2 68418.m06360 splicing factor-related contains simila... 33 0.67
At5g51300.1 68418.m06359 splicing factor-related contains simila... 33 0.67
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.67
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 32 1.2
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 31 1.5
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 31 2.0
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 31 2.0
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 31 2.7
At4g19130.1 68417.m02823 replication protein-related similar to ... 31 2.7
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 2.7
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 30 3.6
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 30 4.7
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 30 4.7
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 29 8.2
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 70.5 bits (165), Expect = 3e-12
Identities = 33/85 (38%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Frame = +2
Query: 53 RAAGNSARGPDEPSCYNCNKTGHIARNCPEGGRDN---SNQTCYNCNKSGHISRNCPD-- 217
R G RG CY C GH AR+C + G N TCY C GHI++ C
Sbjct: 184 RYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKI 243
Query: 218 ------GTKTCYVCGKPGHISRDCD 274
G + CY CG GH++RDCD
Sbjct: 244 PSGGGGGGRACYECGGTGHLARDCD 268
Score = 62.1 bits (144), Expect = 1e-09
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Frame = +2
Query: 53 RAAGNSARGPDEPSCYNCNKTGHIARNC----PEGGRDNSNQTCYNCNKSGHISRNCP-- 214
R G G +CY C GHIA+ C P GG + CY C +GH++R+C
Sbjct: 212 RQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GGGGRACYECGGTGHLARDCDRR 270
Query: 215 --------DGTKTCYVCGKPGHISRDC 271
G+ C++CGK GH +R+C
Sbjct: 271 GSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 58.8 bits (136), Expect = 9e-09
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 21/91 (23%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNS------NQTCYNCNKSGHISRNCPDGT 223
G R E CY C GH AR+C + G NS + CY+C + GH++++C G+
Sbjct: 121 GGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGS 180
Query: 224 ---------------KTCYVCGKPGHISRDC 271
CY+CG GH +RDC
Sbjct: 181 GGNRYGGGGGRGSGGDGCYMCGGVGHFARDC 211
Score = 55.2 bits (127), Expect = 1e-07
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 19/89 (21%)
Frame = +2
Query: 62 GNSARGPDEPS-CYNCNKTGHIARNC----------PEGGRDNSNQTCYNCNKSGHISRN 208
GNS G CY+C + GH+A++C GGR + CY C GH +R+
Sbjct: 151 GNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARD 210
Query: 209 CPD--------GTKTCYVCGKPGHISRDC 271
C G TCY CG GHI++ C
Sbjct: 211 CRQNGGGNVGGGGSTCYTCGGVGHIAKVC 239
Score = 54.4 bits (125), Expect = 2e-07
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 22/91 (24%)
Frame = +2
Query: 65 NSARGPDEPSCYNCNKTGHIARNCPEGG-----------RDNSNQTCYNCNKSGHISRNC 211
NS+RG +C+NC + GH+A++C G R CY C GH +R+C
Sbjct: 87 NSSRGSGG-NCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDC 145
Query: 212 PD-----------GTKTCYVCGKPGHISRDC 271
G + CY CG+ GH+++DC
Sbjct: 146 RQSGGGNSGGGGGGGRPCYSCGEVGHLAKDC 176
Score = 38.3 bits (85), Expect = 0.013
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 16/63 (25%)
Frame = +2
Query: 131 NCPEGGRDNSNQTCYNCNKSGHISRNCPDGT----------------KTCYVCGKPGHIS 262
N E S C+NC + GH++++C G+ CY+CG GH +
Sbjct: 83 NKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFA 142
Query: 263 RDC 271
RDC
Sbjct: 143 RDC 145
Score = 29.1 bits (62), Expect = 8.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 230 CYVCGKPGHISRDCD 274
C+ CG+ GH+++DCD
Sbjct: 96 CFNCGEVGHMAKDCD 110
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 68.1 bits (159), Expect = 1e-11
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 20/93 (21%)
Frame = +2
Query: 62 GNSAR-GPDEPSCYNCNKTGHIARNCPEGG-------RDNSNQTCYNCNKSGHISRNCPD 217
GN AR G CYNC + GHI+++C GG R + CYNC +GH +R+C
Sbjct: 90 GNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTS 149
Query: 218 ------------GTKTCYVCGKPGHISRDCDEE 280
G CY CG GH++RDC ++
Sbjct: 150 AGNGDQRGATKGGNDGCYTCGDVGHVARDCTQK 182
Score = 65.3 bits (152), Expect = 1e-10
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Frame = +2
Query: 56 AAGN-SARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPD----- 217
AAGN + G +CY+C GHIAR+C + ++ CY C SGH++R+C
Sbjct: 218 AAGNVRSGGGGSGTCYSCGGVGHIARDCAT--KRQPSRGCYQCGGSGHLARDCDQRGSGG 275
Query: 218 --GTKTCYVCGKPGHISRDC 271
CY CGK GH +R+C
Sbjct: 276 GGNDNACYKCGKEGHFAREC 295
Score = 63.3 bits (147), Expect = 4e-10
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPE---GGRDNS----NQTCYNCNKSGHISRNCP---DGTKTCYVCG 244
CY C GH AR+C + G S + TCY+C GHI+R+C ++ CY CG
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 245 KPGHISRDCDE 277
GH++RDCD+
Sbjct: 260 GSGHLARDCDQ 270
Score = 58.4 bits (135), Expect = 1e-08
Identities = 30/84 (35%), Positives = 38/84 (45%), Gaps = 21/84 (25%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPE---------GGRDNSNQTCYNCNKSGHISRNCPD---------- 217
CY C GH+AR+C + G N CY C GH +R+C
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSG 225
Query: 218 --GTKTCYVCGKPGHISRDCDEER 283
G+ TCY CG GHI+RDC +R
Sbjct: 226 GGGSGTCYSCGGVGHIARDCATKR 249
Score = 42.7 bits (96), Expect = 6e-04
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Frame = +2
Query: 149 RDNSNQTCYNCNKSGHISRNC------------PDGTKTCYVCGKPGHISRDCDEERN 286
R CYNC + GHIS++C G + CY CG GH +RDC N
Sbjct: 95 RGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGN 152
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 65.7 bits (153), Expect = 8e-11
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 8/72 (11%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQT-CYNCNKSGHISRNCP-----DGTK--TCYVCGKP 250
C C + GH +NCPE ++S + CYNC +GH +CP GTK +C++C
Sbjct: 101 CLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQ 160
Query: 251 GHISRDCDEERN 286
GHIS++C E ++
Sbjct: 161 GHISKNCPENKH 172
Score = 61.3 bits (142), Expect = 2e-09
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQ--TCYNCNKSGHISRNCPDGTK-------TCYVCGK 247
CYNC TGH +CP D + +C+ C GHIS+NCP+ C VCG
Sbjct: 127 CYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGS 186
Query: 248 PGHISRDCDEERN 286
H+ +DC ++ N
Sbjct: 187 VAHLVKDCPDKFN 199
Score = 56.4 bits (130), Expect = 5e-08
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Frame = +2
Query: 50 PRAAGNSARGP-------DEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRN 208
P+ G+S R P C+ C+ HIA+ CPE N+ C C + GH +N
Sbjct: 54 PQRTGSSTRHPLRVPGMKPGEGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKN 113
Query: 209 CPDGT------KTCYVCGKPGHISRDC 271
CP+ K CY CG GH C
Sbjct: 114 CPEKNNESSEKKLCYNCGDTGHSLSHC 140
Score = 41.1 bits (92), Expect = 0.002
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 92 SCYNCNKTGHIARNCPEG--GRDNSNQTCYNCNKSGHISRNCPD 217
SC+ C GHI++NCPE G C C H+ ++CPD
Sbjct: 153 SCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPD 196
Score = 35.1 bits (77), Expect = 0.13
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +2
Query: 170 CYNCNKSGHISRNCPDGT-----KTCYVCGKPGHISRDCDEERN 286
C+ C+ HI++ CP+ + K C C + GH ++C E+ N
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNN 119
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 59.7 bits (138), Expect = 5e-09
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +2
Query: 83 DEPSCYNCNKTGHIARNCPEG-GRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHI 259
+E C++C K+GH AR+C R + C NC K GH++ +C + K C C GHI
Sbjct: 110 NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTN-DKACKNCRTSGHI 168
Query: 260 SRDC 271
+RDC
Sbjct: 169 ARDC 172
Score = 56.4 bits (130), Expect = 5e-08
Identities = 25/71 (35%), Positives = 39/71 (54%)
Frame = +2
Query: 59 AGNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYV 238
+ + +R D C NC K GH+A +C +++ C NC SGHI+R+C + C +
Sbjct: 128 SNSDSRAGDLRLCNNCFKQGHLAADC------TNDKACKNCRTSGHIARDCRN-DPVCNI 180
Query: 239 CGKPGHISRDC 271
C GH++R C
Sbjct: 181 CSISGHVARHC 191
Score = 56.0 bits (129), Expect = 6e-08
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +2
Query: 86 EPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDG------TKTCYVCGK 247
E C+NC + GH+A NC G C++C KSGH +R+C + + C C K
Sbjct: 92 ESRCWNCREPGHVASNCSNEG------ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFK 145
Query: 248 PGHISRDCDEER 283
GH++ DC ++
Sbjct: 146 QGHLAADCTNDK 157
Score = 53.6 bits (123), Expect = 3e-07
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDCD 274
C NC + GH AR+C ++ C NC GHI+ C ++ C+ C +PGH++ +C
Sbjct: 57 CNNCKRPGHFARDC------SNVSVCNNCGLPGHIAAECTAESR-CWNCREPGHVASNCS 109
Query: 275 EERN*HAPNNS 307
E H+ S
Sbjct: 110 NEGICHSCGKS 120
Score = 45.2 bits (102), Expect = 1e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +2
Query: 83 DEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDG 220
++ +C NC +GHIAR+C ++ C C+ SGH++R+CP G
Sbjct: 155 NDKACKNCRTSGHIARDC------RNDPVCNICSISGHVARHCPKG 194
Score = 41.5 bits (93), Expect = 0.001
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Frame = +2
Query: 53 RAAGNSARG-PDEPSCYNCNKTGHIARNCPEGG---RDNSNQTCYNCNKSGHISRNCPD- 217
R +G+ AR ++P C C+ +GH+AR+CP+G D ++ + G +SR D
Sbjct: 163 RTSGHIARDCRNDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMSRDR 222
Query: 218 -GTKT---CYVCGKPGHISRDCDEER 283
G C+ CG GH + +C R
Sbjct: 223 EGVSAMIICHNCGGRGHRAYECPSAR 248
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 55.6 bits (128), Expect = 8e-08
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +2
Query: 92 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 271
SCY+C + GH + NCP + + C+ C H ++ C G CY+C K GH ++DC
Sbjct: 167 SCYSCGEQGHTSFNCPTPTK--RRKPCFICGSLEHGAKQCSKG-HDCYICKKTGHRAKDC 223
Query: 272 DEE 280
++
Sbjct: 224 PDK 226
Score = 51.2 bits (117), Expect = 2e-06
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEG-------GRDNSNQTCYNCNKSGHISRNCPDGTK 226
CY C + GH AR CP GR+ S CY CN SGH +R CP+ ++
Sbjct: 327 CYRCGEEGHFARECPNSSSISTSHGRE-SQTLCYRCNGSGHFARECPNSSQ 376
Score = 41.9 bits (94), Expect = 0.001
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNS-NQTCYNCNKSGHISRNCP-DGTK------TCYVCGKP 250
CY C KTGH A++CP+ ++ S C C GH C + +K CY+C
Sbjct: 210 CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSF 269
Query: 251 GHI 259
GH+
Sbjct: 270 GHL 272
Score = 41.9 bits (94), Expect = 0.001
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 26/86 (30%)
Frame = +2
Query: 92 SCYNCNKTGHIARNCP---EGGRDNSNQT------------CYNCNKSGHISRNCPDGTK 226
SCY C + GH C E +N + T CY C + GH +R CP+ +
Sbjct: 286 SCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSS 345
Query: 227 T-----------CYVCGKPGHISRDC 271
CY C GH +R+C
Sbjct: 346 ISTSHGRESQTLCYRCNGSGHFAREC 371
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 52.8 bits (121), Expect = 6e-07
Identities = 26/73 (35%), Positives = 35/73 (47%)
Frame = +2
Query: 53 RAAGNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTC 232
R +G G + SC+ C + GH+AR C +GG S SG G +C
Sbjct: 124 RGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG-GGGGGGGGLSC 182
Query: 233 YVCGKPGHISRDC 271
Y CG+ GH +RDC
Sbjct: 183 YSCGESGHFARDC 195
Score = 35.9 bits (79), Expect = 0.072
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 56 AAGNSARGPDEPSCYNCNKTGHIARNCPEGG 148
+ G G SCY+C ++GH AR+C GG
Sbjct: 169 SGGGGGGGGGGLSCYSCGESGHFARDCTSGG 199
Score = 33.5 bits (73), Expect = 0.38
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +2
Query: 218 GTKTCYVCGKPGHISRDCDE 277
G +C+ CG+PGH++R+C +
Sbjct: 134 GDNSCFKCGEPGHMARECSQ 153
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 52.4 bits (120), Expect = 8e-07
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2
Query: 50 PRAA-GNSARGPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 211
PR + N +RGP S C+NC GH AR+C G N CY C + GHI RNC
Sbjct: 83 PRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNC 136
Score = 50.4 bits (115), Expect = 3e-06
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Frame = +2
Query: 113 TGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 265
T +R P G RDN ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 266 DC 271
+C
Sbjct: 135 NC 136
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 52.4 bits (120), Expect = 8e-07
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2
Query: 50 PRAA-GNSARGPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 211
PR + N +RGP S C+NC GH AR+C G N CY C + GHI RNC
Sbjct: 42 PRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNC 95
Score = 50.4 bits (115), Expect = 3e-06
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Frame = +2
Query: 113 TGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 265
T +R P G RDN ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 266 DC 271
+C
Sbjct: 94 NC 95
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 50.4 bits (115), Expect = 3e-06
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 50 PRAAGN-SARGPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDG 220
PR + + +RGP + C+NC GH AR+C G N CY C + GHI RNC +
Sbjct: 42 PRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNS 98
Query: 221 TK 226
K
Sbjct: 99 PK 100
Score = 47.6 bits (108), Expect = 2e-05
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Frame = +2
Query: 50 PRAAGNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRN 208
PR A ++ D T +R P G RD ++ C+NC GH +R+
Sbjct: 13 PRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARD 72
Query: 209 CPDGT--KTCYVCGKPGHISRDC 271
C G CY CG+ GHI R+C
Sbjct: 73 CTAGDWKNKCYRCGERGHIERNC 95
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 50.4 bits (115), Expect = 3e-06
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 50 PRAAGN-SARGPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDG 220
PR + + +RGP + C+NC GH AR+C G N CY C + GHI RNC +
Sbjct: 53 PRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNS 109
Query: 221 TK 226
K
Sbjct: 110 PK 111
Score = 47.6 bits (108), Expect = 2e-05
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Frame = +2
Query: 50 PRAAGNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRN 208
PR A ++ D T +R P G RD ++ C+NC GH +R+
Sbjct: 24 PRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARD 83
Query: 209 CPDGT--KTCYVCGKPGHISRDC 271
C G CY CG+ GHI R+C
Sbjct: 84 CTAGDWKNKCYRCGERGHIERNC 106
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 50.4 bits (115), Expect = 3e-06
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 50 PRAAGN-SARGPDEPS--CYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDG 220
PR + + +RGP + C+NC GH AR+C G N CY C + GHI RNC +
Sbjct: 83 PRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNS 139
Query: 221 TK 226
K
Sbjct: 140 PK 141
Score = 47.6 bits (108), Expect = 2e-05
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Frame = +2
Query: 50 PRAAGNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQ-------TCYNCNKSGHISRN 208
PR A ++ D T +R P G RD ++ C+NC GH +R+
Sbjct: 54 PRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARD 113
Query: 209 CPDGT--KTCYVCGKPGHISRDC 271
C G CY CG+ GHI R+C
Sbjct: 114 CTAGDWKNKCYRCGERGHIERNC 136
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 49.2 bits (112), Expect = 7e-06
Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 27/86 (31%)
Frame = +2
Query: 95 CYNCNKTGHIARNCP--------EGGRDNSNQT---CYNCNKSGHISRNCP--------- 214
C+ C K GH +R+C E G+ S+ + CY C K GH SR+C
Sbjct: 270 CFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQ 329
Query: 215 -------DGTKTCYVCGKPGHISRDC 271
T CY CGK GH SRDC
Sbjct: 330 SGQAKSTSSTGDCYKCGKAGHWSRDC 355
Score = 47.2 bits (107), Expect = 3e-05
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Frame = +2
Query: 89 PSCYNCNKTGHIARNCPEGGRDNSNQT-CYNCNKSGHISRNCPDGTKT-----------C 232
P+ Y+ K + + G ++ T CY C K GH +R+C + T C
Sbjct: 211 PTSYSVTKNSNFGDSDTRGYQNAKTGTPCYKCGKEGHWARDCTVQSDTGPVKSTSAAGDC 270
Query: 233 YVCGKPGHISRDC 271
+ CGKPGH SRDC
Sbjct: 271 FKCGKPGHWSRDC 283
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 48.8 bits (111), Expect = 1e-05
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Frame = +2
Query: 83 DEPSCYNCNKTGHIARNCPEGGRDNSNQ-TCYNCNKSGHISRNCPDGTKT-------CYV 238
D +CY C K GH AR+C + + TCY C++ GH S CP+ CY
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYW 91
Query: 239 CGKPGH 256
CG H
Sbjct: 92 CGNQDH 97
Score = 42.7 bits (96), Expect = 6e-04
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Frame = +2
Query: 152 DNSNQTCYNCNKSGHISRNCPDGTK------TCYVCGKPGHISRDCDEERN*HA-PNNS* 310
D + CY C K GH +R+C T+ TCY C + GH S C +R P
Sbjct: 30 DYDPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHC 89
Query: 311 YFIINKNKQNN 343
Y+ N++ + N
Sbjct: 90 YWCGNQDHRFN 100
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 48.4 bits (110), Expect = 1e-05
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNS-NQTCYNCNKSGHISRNC-----PDGTKTCYVCGKPGH 256
CY CN GH+ C E G S +CY C + GH C + +C++CG+ GH
Sbjct: 55 CYVCNSLGHLC--CIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGREGH 112
Query: 257 ISRDC 271
C
Sbjct: 113 FEHQC 117
Score = 42.7 bits (96), Expect = 6e-04
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 92 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCY 235
SCY C + GH C D+ + +C+ C + GH C + C+
Sbjct: 78 SCYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCF 125
Score = 37.9 bits (84), Expect = 0.018
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPE--GGRDNSNQTCYNCNKSGHISRNCPDGTK----TCYVCGKPGH 256
C C GH C D N CY CN GH+ P T+ +CY CG+ GH
Sbjct: 28 CLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLCCIEPGHTQSWTVSCYRCGQLGH 87
Query: 257 ISRDC 271
C
Sbjct: 88 TGLAC 92
Score = 32.7 bits (71), Expect = 0.67
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Frame = +2
Query: 80 PDEPS-CYN--CNKTGHIARNCPEGGRDNSNQT---CYNCNKSGHISRNCPDGTK 226
PD S C+ + G I+ N +T CY C GHI+R+CP+ ++
Sbjct: 161 PDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQ 215
Score = 31.5 bits (68), Expect = 1.5
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = +2
Query: 65 NSARGPDEPSCYNCNKT-----GHIARNCPEGG----RDNSNQTCY-NCNKSGHISRNCP 214
+ +GPD S T GH CP+ ++ S + + + N S +
Sbjct: 132 DECQGPDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGR 191
Query: 215 DGTKTCYVCGKPGHISRDC 271
+ + CY C GHI+RDC
Sbjct: 192 ETRRLCYECKGKGHIARDC 210
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 46.4 bits (105), Expect = 5e-05
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Frame = +2
Query: 95 CYNCNKTGHIARNCPEGGRDNSNQ-TCYNCNKSGHISRNCP-------DGTKT----CYV 238
C NC + GH CPE G + + C C GH R CP G T C +
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGI 325
Query: 239 CGKPGHISRDC 271
CG+ GH SR C
Sbjct: 326 CGERGHNSRTC 336
Score = 33.1 bits (72), Expect = 0.51
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Frame = +2
Query: 170 CYNCNKSGHISRNCPD-GTKT-----CYVCGKPGHISRDCDEERN 286
C NC + GH CP+ GT C CG GH R C + ++
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKS 310
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 45.6 bits (103), Expect = 9e-05
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTC-------YNCNKSGHIS--RNCP 214
G RG + CY C + GH+AR+C EGG Y G+ R
Sbjct: 122 GGGGRGGSD--CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGG 179
Query: 215 DGTKTCYVCGKPGHISRDC 271
G +CY CG+ GH +RDC
Sbjct: 180 GGGGSCYSCGESGHFARDC 198
Score = 37.5 bits (83), Expect = 0.024
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGR 151
G G SCY+C ++GH AR+C GGR
Sbjct: 174 GGRGGGGGGGSCYSCGESGHFARDCTSGGR 203
Score = 36.7 bits (81), Expect = 0.041
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 218 GTKTCYVCGKPGHISRDCDE 277
G CY CG+PGH++RDC E
Sbjct: 127 GGSDCYKCGEPGHMARDCSE 146
Score = 31.5 bits (68), Expect = 1.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 146 GRDNSNQTCYNCNKSGHISRNCPDG 220
G +CY+C +SGH +R+C G
Sbjct: 177 GGGGGGGSCYSCGESGHFARDCTSG 201
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 39.1 bits (87), Expect = 0.008
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +2
Query: 167 TCYNCNKSGHISRNCPDGT---KTCYVCGKPGHISRDC 271
TCY+C + HI+ +CP T K+C++C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFICASLEHGARQC 181
Score = 33.5 bits (73), Expect = 0.38
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 92 SCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNC 211
+CY+C + HI +CP N ++C+ C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFICASLEHGARQC 181
Score = 29.1 bits (62), Expect = 8.2
Identities = 15/55 (27%), Positives = 19/55 (34%)
Frame = +2
Query: 107 NKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 271
N + R E G SN + G TCY CG+ HI+ C
Sbjct: 104 NMVEDVVRGEEEDGETTSNSVMTKLLRGARYFDPLDAGWVTCYSCGEKDHITVSC 158
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 36.3 bits (80), Expect = 0.054
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 53 RAAGNSARGPD-EPSCYNCNKTGHIARNCPEGGRD 154
+ G S+RG E C+ C + GH AR+CP G D
Sbjct: 102 KGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 36.3 bits (80), Expect = 0.054
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 53 RAAGNSARGPD-EPSCYNCNKTGHIARNCPEGGRD 154
+ G S+RG E C+ C + GH AR+CP G D
Sbjct: 102 KGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 35.9 bits (79), Expect = 0.072
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGG 148
G RG + CY C +TGH AR C G
Sbjct: 90 GRGGRGGSDLKCYECGETGHFARECRNRG 118
Score = 33.9 bits (74), Expect = 0.29
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 143 GGRDNSNQTCYNCNKSGHISRNC 211
GGR S+ CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.7 bits (76), Expect = 0.17
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +2
Query: 140 EGGRDNSNQTCYNCNKSGHISRNCPDGTK---TCYVCGKPGHISRDCDEE 280
+GG N ++ R+ P G + C+ CGKPGH +R+C E
Sbjct: 87 QGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSE 136
Score = 32.7 bits (71), Expect = 0.67
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 53 RAAGNSARGPDEPSCYNCNKTGHIARNCP-EGGRDNSNQ 166
R+ + RG + C+ C K GH AR CP E RD +
Sbjct: 108 RSRPSGGRGGGD--CFKCGKPGHFARECPSESSRDGGGR 144
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 34.7 bits (76), Expect = 0.17
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 214
G RG + CY C ++GH AR C G + + ++S R P
Sbjct: 87 GGRGRGGSDLKCYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 33.9 bits (74), Expect = 0.29
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 53 RAAGNSARGPDEPS-CYNCNKTGHIARNCPEG 145
R G RG E S CY C + GH AR C G
Sbjct: 76 RGGGGGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 33.9 bits (74), Expect = 0.29
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 53 RAAGNSARGPDEPS-CYNCNKTGHIARNCPEG 145
R G RG E S CY C + GH AR C G
Sbjct: 76 RGGGGGRRGGIEDSKCYECGELGHFARECRRG 107
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 33.1 bits (72), Expect = 0.51
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 200 SRNCPDGTKTCYVCGKPGHISRDC 271
S D K CY C K GH++RDC
Sbjct: 916 SEETDDAVKICYRCKKVGHLARDC 939
Score = 31.1 bits (67), Expect = 2.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 137 PEGGRDNSNQTCYNCNKSGHISRNC 211
P D++ + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 30.3 bits (65), Expect = 3.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 95 CYNCNKTGHIARNC 136
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 33.1 bits (72), Expect = 0.51
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Frame = +2
Query: 53 RAAGNSARGPDEPSCYNCNKTGHIARNC----PEGGRDNSNQTCYNCNKSGHISRNCP 214
++ G P + C C T H+ +C P ++ CY C GH+S CP
Sbjct: 273 KSVGRKLATPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYCP 330
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.7 bits (71), Expect = 0.67
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Frame = +2
Query: 146 GRDNSNQTCYNCNKSGHISRNCPDGTKT------CYVCGKPGHISRDC 271
G + C C + GH CP T T C +CG GH + DC
Sbjct: 355 GTIRDEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 83 DEPSCYNCNKTGHIARNCPEGGRD-NSNQTCYNCNKSGHISRNCP 214
DE C C + GH CP S+ C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.7 bits (71), Expect = 0.67
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Frame = +2
Query: 146 GRDNSNQTCYNCNKSGHISRNCPDGTKT------CYVCGKPGHISRDC 271
G + C C + GH CP T T C +CG GH + DC
Sbjct: 355 GTIRDEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 83 DEPSCYNCNKTGHIARNCPEGGRD-NSNQTCYNCNKSGHISRNCP 214
DE C C + GH CP S+ C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.7 bits (71), Expect = 0.67
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGG 148
G G DE C+ C + GH AR+CP G
Sbjct: 119 GGGRVGEDE--CFKCGRVGHWARDCPSAG 145
Score = 29.5 bits (63), Expect = 6.2
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 143 GGRDNSNQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRDC 271
GGRD+ + G G C+ CG+ GH +RDC
Sbjct: 99 GGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDC 141
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 31.9 bits (69), Expect = 1.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 230 CYVCGKPGHISRDC 271
C+ CG+PGH SRDC
Sbjct: 8 CFKCGRPGHWSRDC 21
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 31.5 bits (68), Expect = 1.5
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 227 TCYVCGKPGHISRDCDEER 283
+C++CGK GH + DC ++R
Sbjct: 727 SCFICGKSGHRATDCPDKR 745
Score = 30.7 bits (66), Expect = 2.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 149 RDNSNQTCYNCNKSGHISRNCPD 217
R++ +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 29.1 bits (62), Expect = 8.2
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = +2
Query: 59 AGNSARGPDEPS----CYNCNKTGHIARNCPE 142
+ +S+R P S C+ C K+GH A +CP+
Sbjct: 712 SSSSSRAPSRESFGGSCFICGKSGHRATDCPD 743
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +2
Query: 95 CYNCNKTGHIARNC-------PEGGRDNSNQTCYNCNKSGHISRNCPDG 220
C+NC H+ARNC P+ + + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 31.1 bits (67), Expect = 2.0
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -3
Query: 861 VIRLTIGRIGYRAPPRVFFFFLRQHPIYLLTKKSVQNILKYILCNAKTVTLPSPSIV 691
++R+ +GR +RA F +FL+++ ++ V I + +PSPSIV
Sbjct: 119 LVRMRLGRFDFRASMEDFRYFLKKNLKRVILSTGVALIFGLCYLFLRLTAVPSPSIV 175
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 30.7 bits (66), Expect = 2.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 113 TGHIARNCPEGGRDNSNQTCYNCNKSGHISRNCPDGTKT 229
+G +A N E RD C+ C K GH R+C + T T
Sbjct: 588 SGSLAENAEEEQRD---LICFYCGKKGHCLRDCLEVTDT 623
Score = 30.7 bits (66), Expect = 2.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 188 SGHISRNCPDGTKT--CYVCGKPGHISRDCDE 277
SG ++ N + + C+ CGK GH RDC E
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLE 619
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 30.7 bits (66), Expect = 2.7
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Frame = +2
Query: 62 GNSARGPDEPSCYNCNKTGHIARNCPEGGRDNSN----QTCYNCNKSGHISRNCPDGTK 226
G + G +PS G A + G S +C C SGH+S CP TK
Sbjct: 372 GIGSSGTRDPSSVQRRDFGLHAHQSGQSGNHYSGGGATTSCNVCGNSGHVSAKCPGATK 430
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 30.7 bits (66), Expect = 2.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 167 TCYNCNKSGHISRNCPDGTKTCYV 238
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
Score = 30.3 bits (65), Expect = 3.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 86 EPSCYNCNKTGHIARNCP 139
E +CY C + GHIA+ CP
Sbjct: 224 ELTCYRCKQEGHIAKICP 241
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 30.3 bits (65), Expect = 3.6
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 116 GHIARNCPEGGRDNSNQTCYNCNKSGHISRNCP 214
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.9 bits (64), Expect = 4.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 158 SNQTCYNCNKSGHISRNCPDGTKT 229
S+ C++C++ GH ++NCP T T
Sbjct: 2 SSGDCFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 8.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 95 CYNCNKTGHIARNCP 139
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 29.9 bits (64), Expect = 4.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 86 EPSCYNCNKTGHIARNCPEGGRDNSN 163
+ C+ C +TGH A +CP G+ SN
Sbjct: 262 QEKCFVCGQTGHFASDCP--GKSGSN 285
Score = 29.5 bits (63), Expect = 6.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 212 PDGTKTCYVCGKPGHISRDC 271
P + C+VCG+ GH + DC
Sbjct: 259 PGQQEKCFVCGQTGHFASDC 278
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 29.1 bits (62), Expect = 8.2
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 11/52 (21%)
Frame = +2
Query: 89 PSCYNCNKTGHIARNCPEGGRDNSN-----------QTCYNCNKSGHISRNC 211
P C++C GHI C R+ + CY+ GHI RNC
Sbjct: 626 PVCHHCGVVGHIRPRCFRLLREKNRLMNAYDVRFHGPKCYHYGVQGHIKRNC 677
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,865,344
Number of Sequences: 28952
Number of extensions: 387618
Number of successful extensions: 1129
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4163871744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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