Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E04_e413_10.seq
         (1530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    31   0.56 
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    29   1.3  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    29   1.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   3.9  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    27   5.2  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    27   6.9  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    27   9.1  

>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 771 STHTASSPSLIKVAEFATTEDVPCEFCEQLVTHL 872
           S H+ S+P  + V + +T+ +  C +CE L  HL
Sbjct: 114 SPHSFSNPRYVAVPQKSTSPNQVCSYCEPLPNHL 147


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 969

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
 Frame = +2

Query: 251  DICKICTDMVKQ--ARDQLESNTTQEDLKEVFEGSCKLI-PIKVVAKKCMQLADDFVPEL 421
            D+    +D++KQ      +  N T+ED K + E + KLI P  V A +  +     VPE 
Sbjct: 673  DMSDFISDLLKQNFLESLVHGNYTEEDAKNLIESAQKLIDPKPVFASQLSRKRAIIVPEG 732

Query: 422  VETLASQMNPNIVCSVAGLCNNYKIDALLFEYNSQKERVVGCNNCQGTVGALRKK 586
               +   + PN     + +  N +I  L  E +    R+      + T   LR K
Sbjct: 733  GNYIYKTVVPNKEEKNSAIMYNLQISQLDDERSGALTRLARQIMKEPTFSILRTK 787


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +2

Query: 116 LVGNIRCSWGP---SYWCSNFSTGRECKATHHCVSRFWPKYIFPEDTDDICKICTDMVKQ 286
           ++G I  ++GP    Y+   FST  EC A + C+ R  P +  P   +   KI  + +K 
Sbjct: 290 IIGYIHETFGPVSSPYYIVRFSTEEECSAINACMGR--PVFYVPTMAN---KIDPEPLKY 344

Query: 287 ARDQLESNTTQEDL 328
            +    SN   E++
Sbjct: 345 IKGSDASNVYDEEI 358


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
 Frame = -3

Query: 946 SPVAAKTXQHL*NSSSVVXAISTSRRCVT--SCSQNSHGTSSVV---ANSATLIKEGELA 782
           SPVA+ +   + +SSS+V   S S   +T  S S  +  +SS +    NS+TLI      
Sbjct: 689 SPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSSN 748

Query: 781 V*VEPVGALSAHVADALRSEV 719
             +  + + SA V+    S +
Sbjct: 749 TLLSSITSSSAIVSSTTVSNI 769


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
 Frame = +2

Query: 380 KKCMQLADDFVPELVETLASQMNPNIVCSVAGLCNNYKIDALLFEYNSQKERVVGCNNCQ 559
           K C +  DDF+  +V T    ++ +I+  +A L  N ++  +    ++    VV C   +
Sbjct: 101 KPCYEQPDDFISYIVNTKIDSIDESIIHKLALLLRNEQVIWVEKFIHNGGFGVVFCTIDK 160

Query: 560 GTVGALRKKFDQTPYEDFLVGLLKVC---RGMDSLSDS 664
            +    R++   +  E  L+ +  +C   RG++ LS S
Sbjct: 161 ISRLEWREELHDSILEQLLLCVKAMCTVQRGLECLSQS 198


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 221 PKYIFPEDTDDICKICTDMVKQARDQLESNTTQEDLKEVFEGSCKL 358
           P Y      ++I K+ ++M K+A+ + ++NT Q   +E  E   KL
Sbjct: 17  PPYYKLFTRENIEKVISNMEKEAKHEDDANTLQPKTEEEIESLAKL 62


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 165 LLHQYEGPQEHRILPTRCXFVFVG 94
           LL +   P E R  PTRC  VF+G
Sbjct: 354 LLPKLPTPSELRPFPTRCTNVFIG 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,637,577
Number of Sequences: 5004
Number of extensions: 92381
Number of successful extensions: 274
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 858281342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)