Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E04_e413_10.seq
         (1530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    27   0.32 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   5.3  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   9.2  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 0.32
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = +2

Query: 278 VKQARDQLESNTTQEDLKEVFEGSCKLIPIKVVAKKCMQLADDFVP 415
           +K+  D+    TT+E+ K +  G   ++ ++     C++   +F P
Sbjct: 375 IKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPP 420


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
 Frame = -2

Query: 566 QFLDSCYSRRHVPSVS-CIRREERQSCNCYRGRRQSTQCSGSS 441
           QFL  C SRRH  S   C+        N      +   C GS+
Sbjct: 341 QFLQVCRSRRHSDSCCLCLDSMNAVIRNFNESENRRNSCLGST 383


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 442 DEPEHCVLCRRPL*QLQD*RSSLRIQLTE 528
           ++P HC  C R   Q+ + R  LR+   E
Sbjct: 35  EKPYHCSHCDRQFVQVANLRRHLRVHTGE 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 329,933
Number of Sequences: 438
Number of extensions: 7459
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53592000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)