Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E04_e413_10.seq
         (1530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51730.1 68416.m05672 saposin B domain-containing protein con...    66   4e-11
At5g01800.1 68418.m00099 saposin B domain-containing protein con...    65   1e-10
At1g62290.1 68414.m07027 aspartyl protease family protein contai...    35   0.12 
At1g11910.1 68414.m01374 aspartyl protease family protein contai...    33   0.38 
At4g04460.1 68417.m00648 aspartyl protease family protein contai...    32   1.2  
At3g46340.1 68416.m05018 leucine-rich repeat protein kinase, put...    31   2.7  

>At3g51730.1 68416.m05672 saposin B domain-containing protein
           contains Pfam profiles: PF00026 eukaryotic aspartyl
           protease, PF03489 surfactant protein B, PF05184
           saposin-like type B, region 1
          Length = 213

 Score = 66.5 bits (155), Expect = 4e-11
 Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 1/172 (0%)
 Frame = +2

Query: 248 DDICKICTDMVKQARDQLESNTTQEDLKEVFEGSCKLIPIKVVAKKCMQLADDFVPELVE 427
           +D+C +C + V  A   LE N TQ ++ E     C    ++  +++C+ L D +VP    
Sbjct: 37  EDVCTLCEEYVTDALSYLEKNVTQAEIIEDLHDRCS--QLRGYSQQCISLVDYYVPLFFL 94

Query: 428 TLASQMNPNIVCSVAGLCNNYKIDALLFEYNSQKERVVGCNNCQGTVGALRKKF-DQTPY 604
            L S   P+  C    LC   K+ AL+     ++ R   C  C  TV  +  K  D    
Sbjct: 95  QLES-FQPHYFCKRMNLCG--KVVALV-----EEARQDSCGVCHRTVSEILIKLQDPDTQ 146

Query: 605 EDFLVGLLKVCRGMDSLSDSCSMLVFKYYENIVDAVKKDLTPQSICHVSGQC 760
            D +  L+K C+ + +    C  LVF+Y   I+   ++ L    +C +   C
Sbjct: 147 LDIVELLIKGCKSLKNYEKKCKTLVFEYGPLILVNAEEFLVKNDVCTLLRAC 198



 Score = 36.7 bits (81), Expect = 0.040
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = +2

Query: 239 EDTDDICKICTDMVKQARDQLESNTTQEDLKEVFEGSCKLIPIKVVAKKCMQLADDFVPE 418
           E   D C +C   V +   +L+   TQ D+ E+    CK   +K   KKC  L  ++ P 
Sbjct: 120 EARQDSCGVCHRTVSEILIKLQDPDTQLDIVELLIKGCK--SLKNYEKKCKTLVFEYGPL 177

Query: 419 LVETLASQMNPNIVCSVAGLC 481
           ++      +  N VC++   C
Sbjct: 178 ILVNAEEFLVKNDVCTLLRAC 198


>At5g01800.1 68418.m00099 saposin B domain-containing protein
           contains Pfam profiles: PF00026 eukaryotic aspartyl
           protease, PF03489 surfactant protein B, PF05184
           saposin-like type B, region 1
          Length = 217

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 5/181 (2%)
 Frame = +2

Query: 242 DTDDICKICTDMVKQARDQLESNTTQEDLKEVFEGSCKLIPIKVVAKKCMQLADDFVPEL 421
           D + +C++C   V    D L+    Q +L E    SC  IP   + K+C+ + D +  +L
Sbjct: 34  DDNQVCELCDKYVTLVIDYLQDYDNQNELVEALHISCSQIP--PLKKQCLSMVDHYT-QL 90

Query: 422 VETLASQMNPNIVCSVAGLCNNYKIDALLFEYNSQKERVVGCNNCQGTVGALRKKFDQTP 601
             T  S +  + +C    LC      A+   + SQ  +   C  C+ TV  +  K     
Sbjct: 91  FFTQVSTIKSDQICKRLNLCQ-----AVTPAFASQVHQG-NCEACRETVSEVVTKLKDPE 144

Query: 602 YEDFLVGLL-KVCRGMDSLSDSCSMLVFKYYENIVDAVKKDLTPQSIC---HV-SGQCTH 766
            +  ++ LL K C+ +++  D C  +VF+Y   ++  ++K L  + +C   HV  G  TH
Sbjct: 145 TKLKIIRLLLKECKSLNNYQDKCKKMVFEYGPLMLTDLQKFLEKKDVCTILHVCPGPATH 204

Query: 767 R 769
           R
Sbjct: 205 R 205


>At1g62290.1 68414.m07027 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 513

 Score = 35.1 bits (77), Expect = 0.12
 Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
 Frame = +2

Query: 371 VVAKKCMQLADDFVPELVETLASQMNPNIVCSVAGLCN-------NYKIDALLFEYNSQK 529
           VV+++C  + D +   +++ L ++  P  +CS  GLC        +  I++++ + N++ 
Sbjct: 319 VVSQQCKTVVDQYGQTILDLLLAETQPKKICSQIGLCAYDGTHGVSMGIESVVDKENTRS 378

Query: 530 E---RVVGCNNCQGTVGALRKKFDQTPYEDFLVGLL-KVCRGMDS 652
               R  GC  C+  V  ++ +  Q   ++ +V  + ++C  M S
Sbjct: 379 SSGLRDAGCPACEMAVVWIQSQLRQNMTQERIVNYINEICERMPS 423


>At1g11910.1 68414.m01374 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 506

 Score = 33.5 bits (73), Expect = 0.38
 Identities = 22/105 (20%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
 Frame = +2

Query: 371 VVAKKCMQLADDFVPELVETLASQMNPNIVCSVAGLCN-------NYKIDALLFEYNSQK 529
           VV+++C  + D +   +++ L S+  P  +CS  GLC        +  I++++ + N++ 
Sbjct: 312 VVSQQCKTVVDQYGQTILDLLLSETQPKKICSQIGLCTFDGTRGVSMGIESVVDKENAKL 371

Query: 530 ERVVG---CNNCQGTVGALRKKFDQTPYEDFLVGLL-KVCRGMDS 652
              VG   C+ C+  V  ++ +  Q   ++ ++  + ++C  + S
Sbjct: 372 SNGVGDAACSACEMAVVWIQSQLRQNMTQERILNYVNELCERLPS 416



 Score = 30.3 bits (65), Expect = 3.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 653 LSDSCSMLVFKYYENIVDAVKKDLTPQSICHVSGQCT 763
           +S  C  +V +Y + I+D +  +  P+ IC   G CT
Sbjct: 313 VSQQCKTVVDQYGQTILDLLLSETQPKKICSQIGLCT 349


>At4g04460.1 68417.m00648 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 508

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 371 VVAKKCMQLADDFVPELVETLASQMNPNIVCSVAGLC 481
           +V+++C  + D +   ++ +L +Q +P  VCS  G+C
Sbjct: 317 IVSRECKAVVDQYGKTMLNSLLAQEDPKKVCSQIGVC 353


>At3g46340.1 68416.m05018 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 889

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 20/63 (31%), Positives = 35/63 (55%)
 Frame = +2

Query: 344 GSCKLIPIKVVAKKCMQLADDFVPELVETLASQMNPNIVCSVAGLCNNYKIDALLFEYNS 523
           GS + + +K++++   Q   +F  E VE L    + N+V S+ G C+     AL++EY S
Sbjct: 606 GSSQQVAVKLLSQSSTQGYKEFKAE-VELLLRVHHINLV-SLVGYCDERDHLALIYEYMS 663

Query: 524 QKE 532
            K+
Sbjct: 664 NKD 666


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,445,161
Number of Sequences: 28952
Number of extensions: 521642
Number of successful extensions: 1428
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4096401600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)