Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E03_e405_09.seq
         (1525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0141 - 937428-937717,938483-938705                               31   3.2  
08_01_0945 + 9376997-9377818,9378065-9378373,9379510-9379800,938...    30   4.2  
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037...    30   4.2  
01_06_0639 + 30772804-30772904,30773386-30775675                       30   5.5  
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234...    29   7.3  
01_06_0831 + 32287122-32287265,32287372-32287467,32287566-322876...    29   9.7  

>05_01_0141 - 937428-937717,938483-938705
          Length = 170

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 853 FVRCLHSVGTGSGIPGWPXDPSRXHYPAPALLIP 954
           F   +H V  G G  G+P  P + +YP P    P
Sbjct: 14  FSNLMHGVAGGGGGHGYPYPPQQGYYPPPPTAYP 47


>08_01_0945 +
           9376997-9377818,9378065-9378373,9379510-9379800,
           9380060-9380173,9380280-9380981
          Length = 745

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 254 QRDVHRWH*GAAVLFTSRLFVVFRSRVLNW 343
           ++  HRWH G   LF   L  VF+S++  W
Sbjct: 487 RKQQHRWHSGPMQLFRLCLPAVFKSKISTW 516


>02_01_0138 +
           999809-999821,1000456-1001341,1001424-1003221,
           1003716-1003805,1004034-1004111,1004513-1004518,
           1004849-1004958,1005174-1005369
          Length = 1058

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 488 CPSTIIVG*LARIRRMSLALNPEHSFALNMKEKSYRQRG 604
           C S +++  L+ +RR+ + +NPE S A ++K +   Q G
Sbjct: 684 CRSLVVLEGLSSLRRLDIQMNPELSAAWHLKLQEQEQGG 722


>01_06_0639 + 30772804-30772904,30773386-30775675
          Length = 796

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 421 DGSDAEATALLQLMQQQGTLKRLPKYDNCWLARTDPADVA 540
           DG   EA  LL L+Q++GT+   P+Y     A  D   +A
Sbjct: 414 DGKVKEAVELLALLQEEGTVVHAPQYFKLMQACGDATSLA 453


>10_01_0217 +
           2337950-2338085,2340766-2342436,2342636-2342898,
           2343027-2343236,2343436-2343654,2344038-2345000,
           2345279-2345374,2345482-2345580,2345953-2346142,
           2346594-2346823
          Length = 1358

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 655 KAVTDRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEVTDSPYVVY 789
           ++  D F   +K R   V      PVG P+ K+G E+  S   VY
Sbjct: 563 ESTVDSFDLPIKSRQEMVFSDEYKPVGKPIKKVGAELQASGEAVY 607


>01_06_0831 +
           32287122-32287265,32287372-32287467,32287566-32287691,
           32287778-32287817,32287957-32288009
          Length = 152

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -1

Query: 694 DLSYIQGICQLLLFHNREAIYSFRAQISVQPSLTVRLL 581
           +++ ++G+C+ LL   +E I + R  ++VQ S   RLL
Sbjct: 64  EVAAVKGLCRDLLTQKQELIDAMRTSLAVQRSAVQRLL 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,760,305
Number of Sequences: 37544
Number of extensions: 685690
Number of successful extensions: 1575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1575
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4896089576
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)