Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E03_e405_09.seq
         (1525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                      203   3e-52
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)                       120   4e-27
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)                      103   5e-22
SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23)                 30   4.2  
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)                     30   5.6  

>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score =  203 bits (495), Expect = 3e-52
 Identities = 110/230 (47%), Positives = 149/230 (64%), Gaps = 8/230 (3%)
 Frame = +1

Query: 346  ALTPKVRAFVERSAALCQPDHVHVCDGSDAEATALLQLMQQQGTLKRLPKYDNCWLARTD 525
            AL  KV+ FVE +A L  P  +H+CDGSDAE  A ++++  +G    L K++NC+   TD
Sbjct: 13   ALPKKVQEFVEENAKLMTPAQIHICDGSDAENKANIEVLLNKGAAVPLEKHENCYAVFTD 72

Query: 526  PADVARVESRTFICTEHEREVVPSARAGQKSALGNYISPPD-YEKAVTDRFPGCMKGRTM 702
            P DVARVESRTFICT+ + + VP  + G+   L  ++S  + ++K   +R+PGCM GRTM
Sbjct: 73   PQDVARVESRTFICTKCKDDAVPHFK-GKVGKLARWMSLEEAHKKLYEERYPGCMTGRTM 131

Query: 703  YVIPFSMGPVGSPLSKIGVEVTDSPYVVYSMRVMTRIGAKVXEALRQEEQFVRCLHSVG- 879
            YV+PFSMGPVGSP+SKIG+++TDS YVV  MR+MTR+G+ V +AL  +  FVR +HSVG 
Sbjct: 132  YVLPFSMGPVGSPISKIGIQLTDSEYVVCCMRIMTRMGSHVLKAL-GDGDFVRGVHSVGF 190

Query: 880  ---TGSGIPGWPXDPSR---XHYPAPALLIPRSVSYGXXXPRHSLLXKEC 1011
                G     WP DP R    H+PA   +     SYG     +SLL K+C
Sbjct: 191  PLKEGVKEVPWPCDPERTLITHFPATREI----KSYGSGYGGNSLLGKKC 236


>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 707

 Score =  120 bits (288), Expect = 4e-27
 Identities = 55/118 (46%), Positives = 79/118 (66%), Gaps = 3/118 (2%)
 Frame = +1

Query: 346 ALTPKVRAFVERSAALCQPDHVHVCDGSDAEATALLQLMQQQGTLKRLPKYDNCWLARTD 525
           +L  KV+ FV  +  LCQPD +H+CDGS  E  +L+  + ++GT  +L K +N ++ RTD
Sbjct: 154 SLPKKVQDFVTENVELCQPDKIHICDGSPEENQSLVDFLVKKGTCFKLTKRENSYVVRTD 213

Query: 526 PADVARVESRTFICTEHEREVVPSARAGQKSA---LGNYISPPDYEKAVTDRFPGCMK 690
           P DVARVES+TFICTE+ER+ VP  + G+      LG ++S     +A+ +RFPGCMK
Sbjct: 214 PGDVARVESKTFICTENERDAVPDFKKGKDGVVGQLGRWLSVEKANQALGERFPGCMK 271



 Score = 87.4 bits (207), Expect = 3e-17
 Identities = 50/105 (47%), Positives = 67/105 (63%), Gaps = 7/105 (6%)
 Frame = +1

Query: 718  SMGPVGSPLSKIGVEVTDSPYVVYSMRVMTRIGAKVXEALRQEEQFVRCLHSVG----TG 885
            +MGPVGSP++KIG+++TDS YVV  MR+MTR+G+ V +AL Q + FV+CLHSVG     G
Sbjct: 321  NMGPVGSPIAKIGIQLTDSEYVVCCMRIMTRMGSHVLKALDQGD-FVKCLHSVGKPLKEG 379

Query: 886  SGIPGWPXDPSR---XHYPAPALLIPRSVSYGXXXPRHSLLXKEC 1011
                 WP DP R    H+PA   +     S+G     +SLL K+C
Sbjct: 380  EKDVLWPCDPDRTIITHFPADNYI----KSFGSGYGGNSLLGKKC 420


>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 549

 Score =  103 bits (246), Expect = 5e-22
 Identities = 58/111 (52%), Positives = 71/111 (63%), Gaps = 7/111 (6%)
 Frame = +1

Query: 700  MYVIPFSMGPVGSPLSKIGVEVTDSPYVVYSMRVMTRIGAKVXEALRQEEQFVRCLHSVG 879
            MYV+PFSMGPVGSP+SKIG+E+TDS YVV  MR+MTR+G+ V +AL  +  FVRCLHSVG
Sbjct: 1    MYVMPFSMGPVGSPISKIGIELTDSEYVVCCMRIMTRMGSHVLKAL-GDGDFVRCLHSVG 59

Query: 880  ----TGSGIPGWPXDPSR---XHYPAPALLIPRSVSYGXXXPRHSLLXKEC 1011
                 G     WP DP R    H+P    +     SYG     +SLL K+C
Sbjct: 60   GPLHDGKNNVPWPCDPERTLITHFPETREI----KSYGSGYGGNSLLGKKC 106


>SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23)
          Length = 300

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 334 DSASKHHEEPAGEQHGCTLMPPVHISLSEF*IKTPSSVQFSIIYLIMI 191
           DS S   E+P  +      +PPV I+ +     TP SV   ++Y+ M+
Sbjct: 104 DSRSSGFEKPIDDMENVKCLPPVSIASNLTISPTPHSVGIPVVYMDMM 151


>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
          Length = 1222

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 727 PVGSPLSKIGVEVTDSPYVVYSMRVMTRIGAKVXEALRQEEQFVRCLHSVGTGSGIPGWP 906
           P  +PLS +  +V   PY++                LR +E F +C H +G   G+PG+P
Sbjct: 743 PTETPLSTVAPDVESMPYLLLD--------------LRDKEAFDKC-HIIGGRLGLPGFP 787

Query: 907 XDP 915
             P
Sbjct: 788 GSP 790


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,802,843
Number of Sequences: 59808
Number of extensions: 749037
Number of successful extensions: 1786
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1781
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4953341894
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)