Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E03_e405_09.seq
         (1525 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01770.1 68416.m00116 DNA-binding bromodomain-containing prot...    34   0.28 

>At3g01770.1 68416.m00116 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 620

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +1

Query: 442 TALLQLMQQQGTLKRLPKYDNCWLARTDPADVARVE-SRTFICTEHEREVVPSARAGQKS 618
           + +L++ Q +  LKRL    +CWL  T P DV ++     F   +H  ++        K 
Sbjct: 125 STMLRMKQCESLLKRLMSQQHCWLFNT-PVDVVKLNIPDYFTIIKHPMDL---GTVKSKL 180

Query: 619 ALGNYISPPDYEKAVTDRFPGCM 687
             G Y SP ++   V   F   M
Sbjct: 181 TSGTYSSPSEFSADVRLTFRNAM 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,223,112
Number of Sequences: 28952
Number of extensions: 498314
Number of successful extensions: 1089
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4077124416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)