Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E01_e389_09.seq
         (1474 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    28   0.15 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      26   0.61 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      26   0.61 

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 28.3 bits (60), Expect = 0.15
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 565 RNNFSIRYWSWNYRGCWHQTC 503
           R+NF   +  WNY  CW   C
Sbjct: 746 RHNFKGLHLDWNYPVCWQSNC 766



 Score = 23.4 bits (48), Expect = 4.3
 Identities = 8/25 (32%), Positives = 9/25 (36%)
 Frame = -1

Query: 577  ELFNRNNFSIRYWSWNYRGCWHQTC 503
            +    NNF      W Y  CW   C
Sbjct: 1930 DFIETNNFDGLDLDWEYPKCWQVDC 1954


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 26.2 bits (55), Expect = 0.61
 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
 Frame = +3

Query: 846 HWPSFYTS*LGKPWR--YPTYSPCSTXP-------FSPAGXIXXRPXRSPXP 974
           H PS Y    G  +R  YP+  P ST         FSP G I   P  SP P
Sbjct: 189 HTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFYRFSPTGLIPPHPGLSPHP 240


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 0.61
 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
 Frame = +3

Query: 846 HWPSFYTS*LGKPWR--YPTYSPCSTXP-------FSPAGXIXXRPXRSPXP 974
           H PS Y    G  +R  YP+  P ST         FSP G I   P  SP P
Sbjct: 81  HTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFYRFSPTGLIPPHPGLSPHP 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,619
Number of Sequences: 336
Number of extensions: 4538
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 44042750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)