Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E01_e389_09.seq
         (1474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0019 + 403078-404211                                             31   3.0  
12_01_0861 + 8153108-8153266,8154633-8155136                           29   7.0  
04_04_0012 + 22145111-22146388                                         29   7.0  
03_05_0106 + 20880069-20881001                                         29   7.0  
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130...    29   9.3  

>09_01_0019 + 403078-404211
          Length = 377

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +2

Query: 311 GESGFDSGEGA*ETATTSKEGSRRANYPLPARGGSDEK*RYG 436
           G S  DSG GA ++A   K  SRR  +      GSD   R+G
Sbjct: 321 GASDGDSGSGASDSADDRKRSSRRRRHRKSESSGSDGDERHG 362


>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -2

Query: 435 PYRYFSSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVVAE 280
           P    SS  P    G   RL  S  +VA+ + P P S+P  D P   TT+ + E
Sbjct: 94  PRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVALIE 147


>04_04_0012 + 22145111-22146388
          Length = 425

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 488 SLKYFECTHSDYEASLESRIVIFRH 414
           SLKYFE    DY++ LE   ++ RH
Sbjct: 300 SLKYFETALRDYKSQLEEDPIVHRH 324


>03_05_0106 + 20880069-20881001
          Length = 310

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 488 SLKYFECTHSDYEASLESRIVIFRH 414
           SLKYFE    DY++ LE   ++ RH
Sbjct: 185 SLKYFETALRDYKSQLEEDPIVHRH 209


>03_01_0161 +
           1307206-1307769,1307979-1308101,1308182-1308286,
           1308688-1308867,1308988-1309050,1309151-1309345,
           1309704-1309805,1309885-1309947,1310045-1310113,
           1310215-1310270,1310587-1310755
          Length = 562

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 24/86 (27%), Positives = 36/86 (41%)
 Frame = -2

Query: 420 SSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLKD 241
           SS PP   S   +RL  +      S AP P  +  +P P +  V ++  I S  G +L  
Sbjct: 6   SSKPPTPASTPSSRLAAAPSSRVSSAAPHPSPSSSAPTPASRTVYSDRFIPSRAGSNL-- 63

Query: 240 ASPVLDHAIGKSYPDSSKLTTSDARP 163
              + D A   S+ D++    S   P
Sbjct: 64  --ALFDLAPSPSHHDAAAAAASPGAP 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,558,079
Number of Sequences: 37544
Number of extensions: 585074
Number of successful extensions: 1387
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4698853740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)