Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_E01_e389_09.seq
         (1474 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical p...    29   6.3  
Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical p...    29   6.3  
Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical pr...    29   8.4  

>Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical
           protein F10B5.7 protein.
          Length = 1780

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = -1

Query: 757 TLICSK*NCRPTSTLTEEHRDRILILNRRLTAGSPTICSADVSVSPLMRCTGSAAHKCNY 578
           TL   K  C P +TLT  H +++L+   R+   S +    DV   P+   + S+A   N+
Sbjct: 43  TLPNRKTECTPVNTLTIGHSNKMLLTTFRMDRNSKSKSEVDVQEQPVH--SSSSAFPGNH 100

Query: 577 ELFNRNNFS 551
                NNFS
Sbjct: 101 ----LNNFS 105


>Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical
           protein F10B5.7 protein.
          Length = 1780

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = -1

Query: 757 TLICSK*NCRPTSTLTEEHRDRILILNRRLTAGSPTICSADVSVSPLMRCTGSAAHKCNY 578
           TL   K  C P +TLT  H +++L+   R+   S +    DV   P+   + S+A   N+
Sbjct: 43  TLPNRKTECTPVNTLTIGHSNKMLLTTFRMDRNSKSKSEVDVQEQPVH--SSSSAFPGNH 100

Query: 577 ELFNRNNFS 551
                NNFS
Sbjct: 101 ----LNNFS 105


>Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical
           protein D2030.6 protein.
          Length = 824

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 600 LPVHRISGDTDTSAEHIVGEPAVKRRFNIKILSRCSSVSVEVGRQFYFE 746
           +P+     D      H+  EP V  + N + + R ++V+ E+G  F F+
Sbjct: 57  IPIEMTQSDYSIYQYHVEFEPTVDSKANREKMLRDNNVTDEIGHHFVFD 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,830,101
Number of Sequences: 27780
Number of extensions: 445285
Number of successful extensions: 1009
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4225111268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)