Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D12_e476_08.seq
         (1538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)                      31   2.5  
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)                  29   7.5  
SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   9.9  

>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
          Length = 595

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -3

Query: 1161 PRXXSXGGGAXRX-RRRTXGGGXXXXXGGGGVQXGXXXGRXRP 1036
            P   S G    R  RRR  GGG     GGGG       GR RP
Sbjct: 496  PSGSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGGRGGRGRGRP 538


>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
          Length = 252

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 1161 PRXXSXGGGAXRXRRRTXGGGXXXXXGG-GGVQXGXXXGRXR 1039
            PR  S GGG+     R+ GGG     GG GG   G   G  R
Sbjct: 174  PRGDSGGGGSQGGGYRSGGGGYGGSKGGYGGGSGGGGYGGGR 215


>SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = -3

Query: 1164 GPRXXSXGGGAXRXRRRTXGGGXXXXXGGGGVQXGXXXGRXRPXXPG 1024
            G      GGGA        GGG     GGGGV  G          PG
Sbjct: 313  GGGATGGGGGATGGGVGATGGGGGATGGGGGVTGGGGGATGGGGGPG 359


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,237,150
Number of Sequences: 59808
Number of extensions: 480468
Number of successful extensions: 1988
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1809
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5012030779
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)