Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D12_e476_08.seq
         (1538 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y10871-1|CAA71821.1|  201|Homo sapiens twist protein.                  33   2.1  
X91662-1|CAA62850.1|  201|Homo sapiens TWIST protein protein.          33   2.1  

>Y10871-1|CAA71821.1|  201|Homo sapiens twist protein.
          Length = 201

 Score = 33.5 bits (73), Expect = 2.1
 Identities = 18/48 (37%), Positives = 19/48 (39%)
 Frame = -3

Query: 1161 PRXXSXGGGAXRXRRRTXGGGXXXXXGGGGVQXGXXXGRXRPXXPGEK 1018
            P     GG   R  RRT GGG      GGGV  G   G       G+K
Sbjct: 29   PPSGKRGGRKRRTSRRTAGGGAGPGGAGGGVGGGDEPGSPAQGKRGKK 76


>X91662-1|CAA62850.1|  201|Homo sapiens TWIST protein protein.
          Length = 201

 Score = 33.5 bits (73), Expect = 2.1
 Identities = 18/48 (37%), Positives = 19/48 (39%)
 Frame = -3

Query: 1161 PRXXSXGGGAXRXRRRTXGGGXXXXXGGGGVQXGXXXGRXRPXXPGEK 1018
            P     GG   R  RRT GGG      GGGV  G   G       G+K
Sbjct: 29   PPSGKRGGRKRRTSRRTAGGGAGPGGAGGGVGGGDEPGSPAQGKRGKK 76


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,621,505
Number of Sequences: 237096
Number of extensions: 2646736
Number of successful extensions: 16024
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15314
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22965027146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)