Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_D12_e476_08.seq
(1538 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 33 0.41
U27312-10|AAA68253.1| 231|Caenorhabditis elegans Hypothetical p... 31 1.6
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 30 3.8
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 6.6
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 6.6
AF000196-9|AAO61448.1| 395|Caenorhabditis elegans Hypothetical ... 29 6.6
AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical ... 29 6.6
AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical ... 29 6.6
AF098992-8|AAC67454.2| 239|Caenorhabditis elegans Hypothetical ... 29 8.8
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 33.5 bits (73), Expect = 0.41
Identities = 22/91 (24%), Positives = 23/91 (25%)
Frame = +2
Query: 1151 CXRGPXXXXXAGGGGPXPXRXXAXXXRXXGXXXXXXXXXXXXXXXXXSXXXGRGXGGGXS 1330
C P GGGG P G G G GGG
Sbjct: 311 CPCPPRTPAGGGGGGDFPAGGGGGGYSTGGGGGRADSGGAAGGAGGAGGYSGGGGGGGGG 370
Query: 1331 LXGXXGXXXGGAXRXXGXGAPXXSPXRXXGP 1423
G GG G GAP +P P
Sbjct: 371 AAAGGGYNAGGG----GGGAPQAAPAPQAAP 397
Score = 29.1 bits (62), Expect = 8.8
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = -3
Query: 1197 GPPPPAXXXXXGPRXXSXGGGAXRXRRRTXGGGXXXXXGGGGVQXGXXXG 1048
GP A PR + GGG GGG GGG G G
Sbjct: 303 GPGTDAAYCPCPPRTPAGGGGGGDFPAGGGGGGYSTGGGGGRADSGGAAG 352
>U27312-10|AAA68253.1| 231|Caenorhabditis elegans Hypothetical
protein F26A1.12 protein.
Length = 231
Score = 31.5 bits (68), Expect = 1.6
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 1474 GPRPPXPXAXPSPPPXXP 1527
GPRPP P P PPP P
Sbjct: 47 GPRPPRPNRPPRPPPATP 64
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical protein
E02A10.2 protein.
Length = 385
Score = 30.3 bits (65), Expect = 3.8
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -3
Query: 1194 PPPPAXXXXXGPRXXSXGGGAXRXRRRTXGGGXXXXXGGGGVQXGXXXG 1048
PPPPA G GGG GGG GGGG G G
Sbjct: 113 PPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGGGGG 161
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 6.6
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = -3
Query: 1194 PPPPAXXXXXGPRXXSXGGGAXRXRRRTXGGGXXXXXGGGGVQXGXXXG 1048
PPPP P S GGG + + GGG GGG G
Sbjct: 303 PPPPPPPPPPAPAPVSSGGGYSE--QSSGGGGGSSYSGGGEASSSSGGG 349
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 6.6
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = -3
Query: 1194 PPPPAXXXXXGPRXXSXGGGAXRXRRRTXGGGXXXXXGGGGVQXGXXXG 1048
PPPP P S GGG + + GGG GGG G
Sbjct: 303 PPPPPPPPPPAPAPVSSGGGYSE--QSSGGGGGSSYSGGGEASSSSGGG 349
>AF000196-9|AAO61448.1| 395|Caenorhabditis elegans Hypothetical
protein B0041.2c protein.
Length = 395
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -3
Query: 1197 GPPPPAXXXXXGPRXXSXGGGAXRXRRRTXGGGXXXXXGGGG 1072
G PPP GP GGG GG GGGG
Sbjct: 348 GGPPPGSDGGAGPSTSRSGGGG------AAGGDSFNSSGGGG 383
>AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical
protein B0041.2b protein.
Length = 624
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -3
Query: 1197 GPPPPAXXXXXGPRXXSXGGGAXRXRRRTXGGGXXXXXGGGG 1072
G PPP GP GGG GG GGGG
Sbjct: 577 GGPPPGSDGGAGPSTSRSGGGG------AAGGDSFNSSGGGG 612
>AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical
protein B0041.2a protein.
Length = 706
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -3
Query: 1197 GPPPPAXXXXXGPRXXSXGGGAXRXRRRTXGGGXXXXXGGGG 1072
G PPP GP GGG GG GGGG
Sbjct: 659 GGPPPGSDGGAGPSTSRSGGGG------AAGGDSFNSSGGGG 694
>AF098992-8|AAC67454.2| 239|Caenorhabditis elegans Hypothetical
protein F53C3.3 protein.
Length = 239
Score = 29.1 bits (62), Expect = 8.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 1304 GRGXGGGXSLXGXXGXXXGGAXRXXGXGAPXXS 1402
GRG GGG + G G GG+ R G + S
Sbjct: 26 GRGGGGGGARGGVGGRGGGGSFRSGGARSSSSS 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,952,049
Number of Sequences: 27780
Number of extensions: 406536
Number of successful extensions: 1667
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1568
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4431789446
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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