Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D12_e476_08.seq
         (1538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38560.1 68418.m04662 protein kinase family protein contains ...    31   2.0  
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /...    31   2.0  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    25   3.9  
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)...    29   8.2  
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   8.2  
At1g02405.1 68414.m00187 proline-rich family protein contains pr...    29   8.2  

>At5g38560.1 68418.m04662 protein kinase family protein contains
            protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 1386 PXPXXRXAPPXXXPXXPXXDXPPPXPRP 1303
            P P    +PP   P  P    PPP P P
Sbjct: 173  PPPATSASPPSSNPTDPSTLAPPPTPLP 200


>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
            RNA-binding protein cp 29 nearly identical to SP|Q43349
            29 kDa ribonucleoprotein, chloroplast precursor
            (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 342

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
 Frame = -3

Query: 1209 RXGXGPPPPAX--XXXXGPRXXSXGGGAXRXRRRTXGGGXXXXXGGG-GVQXGXXXGRXR 1039
            R   GPPPP        GPR    G           GGG     GGG G + G   G  R
Sbjct: 171  RVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQR 230


>At1g59910.1 68414.m06749 formin homology 2 domain-containing protein
            / FH2 domain-containing protein contains formin homology
            2 domain, Pfam:PF02128
          Length = 929

 Score = 25.0 bits (52), Expect(2) = 3.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 1386 PXPXXRXAPPXXXPXXPXXDXPPPXPRP 1303
            P P  + +PP   P  P    PPP P P
Sbjct: 376  PGPANQTSPP--PPPPPSAAAPPPPPPP 401



 Score = 23.4 bits (48), Expect(2) = 3.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 1209 RXGXGPPPPAXXXXXGP 1159
            + G GPPPP      GP
Sbjct: 416  KKGAGPPPPPPMSKKGP 432


>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
            glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
            thaliana] GI:2826811
          Length = 158

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = -3

Query: 1185 PAXXXXXGPRXXSXGGGAXRXRRRTXGGGXXXXXGGGGVQXGXXXG 1048
            PA      PR    GGG         GGG     GGGG   G   G
Sbjct: 110  PANDRPSAPRAYGGGGGYSGGGGGYGGGGGGYGGGGGGYGGGGDGG 155


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein similar
            to chloroplast membrane protein (ALBINO3) (GI:3927828)
            [Arabidopsis thaliana]
          Length = 1013

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 18/48 (37%), Positives = 20/48 (41%)
 Frame = -3

Query: 1203 GXGPPPPAXXXXXGPRXXSXGGGAXRXRRRTXGGGXXXXXGGGGVQXG 1060
            G G P P       P   S GGG+      T GGG     GGGG + G
Sbjct: 402  GGGSPSPGGGSGSPP---STGGGSG-SPPSTGGGGGSPSKGGGGGKSG 445


>At1g02405.1 68414.m00187 proline-rich family protein contains
            proline-rich region, INTERPRO:IPR000694
          Length = 134

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 1477 PRPPXPXAXPSPPPXXP 1527
            P PP P   PSPPP  P
Sbjct: 53   PSPPPPSCTPSPPPPSP 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,148,971
Number of Sequences: 28952
Number of extensions: 360044
Number of successful extensions: 2489
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2110
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4125317376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)