Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D11_e468_07.seq
         (1465 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.   260   2e-71
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    88   1e-19

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score =  260 bits (637), Expect = 2e-71
 Identities = 119/133 (89%), Positives = 124/133 (93%)
 Frame = +1

Query: 223 VHKRDKDAIYGHPLFPLLALIFEKCELATCTPRDPGVAGGDVCSSESFNEDIAVFSKQIR 402
           V KRDKDAIYGHPLFPLLALIFEKCELATCTPR+PGVAGGDVCSSESFNEDIAVFSKQIR
Sbjct: 72  VGKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFSKQIR 131

Query: 403 QEKPYYIXDPEVDSLMVQAIQVLRFHLL*LEKVHELCDNFCHRYINCLKGKMPIDLVIDE 582
           QEKPYYI DPEVDSLMVQAIQVLRFHLL LEKVHELCDNFCHRYI+CLKGKMPIDLVIDE
Sbjct: 132 QEKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDE 191

Query: 583 REXARPPDAXXET 621
           R+  +PP+    T
Sbjct: 192 RDGGKPPELTGST 204


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 88.2 bits (209), Expect = 1e-19
 Identities = 37/48 (77%), Positives = 41/48 (85%)
 Frame = +1

Query: 478 HLL*LEKVHELCDNFCHRYINCLKGKMPIDLVIDEREXARPPDAXXET 621
           HLL LEKVHELCDNFCHRYI+CLKGKMPIDLVIDER+  +PP+    T
Sbjct: 1   HLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDERDGGKPPELTGST 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,071
Number of Sequences: 336
Number of extensions: 2424
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 43735475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)