Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_D11_e468_07.seq
(1465 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF427477-1|AAL65145.1| 527|Caenorhabditis elegans UNC-62 splice... 170 2e-42
AF427476-1|AAL65144.1| 523|Caenorhabditis elegans UNC-62 splice... 170 2e-42
AF427475-1|AAL65143.1| 564|Caenorhabditis elegans UNC-62 splice... 170 2e-42
AF427474-1|AAL65142.1| 560|Caenorhabditis elegans UNC-62 splice... 170 2e-42
AC006692-5|AAV58860.1| 490|Caenorhabditis elegans Uncoordinated... 170 2e-42
AC006692-4|AAF39975.1| 527|Caenorhabditis elegans Uncoordinated... 170 2e-42
AC006692-3|AAO61420.1| 523|Caenorhabditis elegans Uncoordinated... 170 2e-42
AC006692-2|AAF39974.1| 564|Caenorhabditis elegans Uncoordinated... 170 2e-42
AC006692-1|AAO61421.1| 560|Caenorhabditis elegans Uncoordinated... 170 2e-42
Z69791-6|CAL36514.1| 241|Caenorhabditis elegans Hypothetical pr... 42 8e-04
Z69791-5|CAL36513.1| 281|Caenorhabditis elegans Hypothetical pr... 42 8e-04
DQ118141-1|AAZ23152.1| 241|Caenorhabditis elegans hox cofactor ... 42 8e-04
>AF427477-1|AAL65145.1| 527|Caenorhabditis elegans UNC-62 splice
variant 1b-7b protein.
Length = 527
Score = 170 bits (413), Expect = 2e-42
Identities = 77/130 (59%), Positives = 100/130 (76%), Gaps = 5/130 (3%)
Frame = +1
Query: 229 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 399
KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F +
Sbjct: 57 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 116
Query: 400 RQ--EKPYYIXDPEVDSLMVQAIQVLRFHLL*LEKVHELCDNFCHRYINCLKGKMPIDLV 573
++ +K YY+ +P++D +M+Q+IQ+LRFHLL LEKVHELCDNFC+RY+ CLKGKMP+D+V
Sbjct: 117 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 176
Query: 574 IDEREXARPP 603
DER + P
Sbjct: 177 GDERASSSQP 186
>AF427476-1|AAL65144.1| 523|Caenorhabditis elegans UNC-62 splice
variant 1b-7a protein.
Length = 523
Score = 170 bits (413), Expect = 2e-42
Identities = 77/130 (59%), Positives = 100/130 (76%), Gaps = 5/130 (3%)
Frame = +1
Query: 229 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 399
KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F +
Sbjct: 57 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 116
Query: 400 RQ--EKPYYIXDPEVDSLMVQAIQVLRFHLL*LEKVHELCDNFCHRYINCLKGKMPIDLV 573
++ +K YY+ +P++D +M+Q+IQ+LRFHLL LEKVHELCDNFC+RY+ CLKGKMP+D+V
Sbjct: 117 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 176
Query: 574 IDEREXARPP 603
DER + P
Sbjct: 177 GDERASSSQP 186
>AF427475-1|AAL65143.1| 564|Caenorhabditis elegans UNC-62 splice
variant 1a-7b protein.
Length = 564
Score = 170 bits (413), Expect = 2e-42
Identities = 77/130 (59%), Positives = 100/130 (76%), Gaps = 5/130 (3%)
Frame = +1
Query: 229 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 399
KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F +
Sbjct: 94 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 153
Query: 400 RQ--EKPYYIXDPEVDSLMVQAIQVLRFHLL*LEKVHELCDNFCHRYINCLKGKMPIDLV 573
++ +K YY+ +P++D +M+Q+IQ+LRFHLL LEKVHELCDNFC+RY+ CLKGKMP+D+V
Sbjct: 154 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 213
Query: 574 IDEREXARPP 603
DER + P
Sbjct: 214 GDERASSSQP 223
>AF427474-1|AAL65142.1| 560|Caenorhabditis elegans UNC-62 splice
variant 1a-7a protein.
Length = 560
Score = 170 bits (413), Expect = 2e-42
Identities = 77/130 (59%), Positives = 100/130 (76%), Gaps = 5/130 (3%)
Frame = +1
Query: 229 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 399
KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F +
Sbjct: 94 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 153
Query: 400 RQ--EKPYYIXDPEVDSLMVQAIQVLRFHLL*LEKVHELCDNFCHRYINCLKGKMPIDLV 573
++ +K YY+ +P++D +M+Q+IQ+LRFHLL LEKVHELCDNFC+RY+ CLKGKMP+D+V
Sbjct: 154 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 213
Query: 574 IDEREXARPP 603
DER + P
Sbjct: 214 GDERASSSQP 223
>AC006692-5|AAV58860.1| 490|Caenorhabditis elegans Uncoordinated
protein 62, isoform g protein.
Length = 490
Score = 170 bits (413), Expect = 2e-42
Identities = 77/130 (59%), Positives = 100/130 (76%), Gaps = 5/130 (3%)
Frame = +1
Query: 229 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 399
KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F +
Sbjct: 20 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 79
Query: 400 RQ--EKPYYIXDPEVDSLMVQAIQVLRFHLL*LEKVHELCDNFCHRYINCLKGKMPIDLV 573
++ +K YY+ +P++D +M+Q+IQ+LRFHLL LEKVHELCDNFC+RY+ CLKGKMP+D+V
Sbjct: 80 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 139
Query: 574 IDEREXARPP 603
DER + P
Sbjct: 140 GDERASSSQP 149
>AC006692-4|AAF39975.1| 527|Caenorhabditis elegans Uncoordinated
protein 62, isoform b protein.
Length = 527
Score = 170 bits (413), Expect = 2e-42
Identities = 77/130 (59%), Positives = 100/130 (76%), Gaps = 5/130 (3%)
Frame = +1
Query: 229 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 399
KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F +
Sbjct: 57 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 116
Query: 400 RQ--EKPYYIXDPEVDSLMVQAIQVLRFHLL*LEKVHELCDNFCHRYINCLKGKMPIDLV 573
++ +K YY+ +P++D +M+Q+IQ+LRFHLL LEKVHELCDNFC+RY+ CLKGKMP+D+V
Sbjct: 117 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 176
Query: 574 IDEREXARPP 603
DER + P
Sbjct: 177 GDERASSSQP 186
>AC006692-3|AAO61420.1| 523|Caenorhabditis elegans Uncoordinated
protein 62, isoform e protein.
Length = 523
Score = 170 bits (413), Expect = 2e-42
Identities = 77/130 (59%), Positives = 100/130 (76%), Gaps = 5/130 (3%)
Frame = +1
Query: 229 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 399
KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F +
Sbjct: 57 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 116
Query: 400 RQ--EKPYYIXDPEVDSLMVQAIQVLRFHLL*LEKVHELCDNFCHRYINCLKGKMPIDLV 573
++ +K YY+ +P++D +M+Q+IQ+LRFHLL LEKVHELCDNFC+RY+ CLKGKMP+D+V
Sbjct: 117 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 176
Query: 574 IDEREXARPP 603
DER + P
Sbjct: 177 GDERASSSQP 186
>AC006692-2|AAF39974.1| 564|Caenorhabditis elegans Uncoordinated
protein 62, isoform a protein.
Length = 564
Score = 170 bits (413), Expect = 2e-42
Identities = 77/130 (59%), Positives = 100/130 (76%), Gaps = 5/130 (3%)
Frame = +1
Query: 229 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 399
KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F +
Sbjct: 94 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 153
Query: 400 RQ--EKPYYIXDPEVDSLMVQAIQVLRFHLL*LEKVHELCDNFCHRYINCLKGKMPIDLV 573
++ +K YY+ +P++D +M+Q+IQ+LRFHLL LEKVHELCDNFC+RY+ CLKGKMP+D+V
Sbjct: 154 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 213
Query: 574 IDEREXARPP 603
DER + P
Sbjct: 214 GDERASSSQP 223
>AC006692-1|AAO61421.1| 560|Caenorhabditis elegans Uncoordinated
protein 62, isoform f protein.
Length = 560
Score = 170 bits (413), Expect = 2e-42
Identities = 77/130 (59%), Positives = 100/130 (76%), Gaps = 5/130 (3%)
Frame = +1
Query: 229 KRDKDAIYGHPLFPLLALIFEKCELATCTPRDP---GVAGGDVCSSESFNEDIAVFSKQI 399
KRDK++IY HPL+PLL L+FEKCELAT TPRD G DVCSS SF +D+ F +
Sbjct: 94 KRDKESIYAHPLYPLLVLLFEKCELATSTPRDTSRDGSTSSDVCSSASFKDDLNEFVRHT 153
Query: 400 RQ--EKPYYIXDPEVDSLMVQAIQVLRFHLL*LEKVHELCDNFCHRYINCLKGKMPIDLV 573
++ +K YY+ +P++D +M+Q+IQ+LRFHLL LEKVHELCDNFC+RY+ CLKGKMP+D+V
Sbjct: 154 QENADKQYYVPNPQLDQIMLQSIQMLRFHLLELEKVHELCDNFCNRYVVCLKGKMPLDIV 213
Query: 574 IDEREXARPP 603
DER + P
Sbjct: 214 GDERASSSQP 223
>Z69791-6|CAL36514.1| 241|Caenorhabditis elegans Hypothetical
protein F39D8.2b protein.
Length = 241
Score = 42.3 bits (95), Expect = 8e-04
Identities = 30/103 (29%), Positives = 49/103 (47%)
Frame = +1
Query: 241 DAIYGHPLFPLLALIFEKCELATCTPRDPGVAGGDVCSSESFNEDIAVFSKQIRQEKPYY 420
+ I HPL P++ L+ EKCE A T D+ + + + Q+ +
Sbjct: 25 EKIASHPLMPIVELLLEKCETAATTFDRKAFETDDI---KRLFQSLEQRGVQLSSNR--- 78
Query: 421 IXDPEVDSLMVQAIQVLRFHLL*LEKVHELCDNFCHRYINCLK 549
EVD LM AI LR ++ LE+V+ L ++F +Y+ L+
Sbjct: 79 ---DEVDELMETAILALRTCMVELERVYSLMESFKAKYLATLR 118
>Z69791-5|CAL36513.1| 281|Caenorhabditis elegans Hypothetical
protein F39D8.2a protein.
Length = 281
Score = 42.3 bits (95), Expect = 8e-04
Identities = 30/103 (29%), Positives = 49/103 (47%)
Frame = +1
Query: 241 DAIYGHPLFPLLALIFEKCELATCTPRDPGVAGGDVCSSESFNEDIAVFSKQIRQEKPYY 420
+ I HPL P++ L+ EKCE A T D+ + + + Q+ +
Sbjct: 65 EKIASHPLMPIVELLLEKCETAATTFDRKAFETDDI---KRLFQSLEQRGVQLSSNR--- 118
Query: 421 IXDPEVDSLMVQAIQVLRFHLL*LEKVHELCDNFCHRYINCLK 549
EVD LM AI LR ++ LE+V+ L ++F +Y+ L+
Sbjct: 119 ---DEVDELMETAILALRTCMVELERVYSLMESFKAKYLATLR 158
>DQ118141-1|AAZ23152.1| 241|Caenorhabditis elegans hox cofactor
PSA-3 splice variantbeta protein.
Length = 241
Score = 42.3 bits (95), Expect = 8e-04
Identities = 30/103 (29%), Positives = 49/103 (47%)
Frame = +1
Query: 241 DAIYGHPLFPLLALIFEKCELATCTPRDPGVAGGDVCSSESFNEDIAVFSKQIRQEKPYY 420
+ I HPL P++ L+ EKCE A T D+ + + + Q+ +
Sbjct: 25 EKIASHPLMPIVELLLEKCETAATTFDRKAFETDDI---KRLFQSLEQRGVQLSSNR--- 78
Query: 421 IXDPEVDSLMVQAIQVLRFHLL*LEKVHELCDNFCHRYINCLK 549
EVD LM AI LR ++ LE+V+ L ++F +Y+ L+
Sbjct: 79 ---DEVDELMETAILALRTCMVELERVYSLMESFKAKYLATLR 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,574,270
Number of Sequences: 27780
Number of extensions: 237865
Number of successful extensions: 511
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4193891234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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