Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_D10_e460_08.seq
         (1548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    27   7.0  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   9.2  

>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 210 HLILKILL*ERIFSVCFGFYFTLYLK*SQK 121
           H IL+++L +   SVCFGF +   LK  QK
Sbjct: 310 HRILRLVLDDSRKSVCFGFCYVDTLKILQK 339


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -1

Query: 1503 PGGGRPXXPXXRXVGPXRGGPXXPGXKGQXPSV 1405
            P   +P  P      P RG P  P   G  PSV
Sbjct: 100  PSYSQPSQPPKEPALPSRGTPSLPSRPGSRPSV 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,539,035
Number of Sequences: 5004
Number of extensions: 76113
Number of successful extensions: 147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 870174386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)